[Home] | [Total List]

[182130_s_at]

Description F59A3.4 /REP_DB=WormBase Gene ID /WP=CE11422 /TR=P91354 /GB=AAB37816.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 83      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 375.1
(-3)
P 		419.3
(-0.7)
P 		426.7
(-0.3)
P 		490.9
(3)
P 		116
B 356.9
(-2.5)
P 		344.6
(-3)
P 		361.5
(-2.2)
P 		478.8
(3)
P 		134
C 341.7
(-2.7)
P 		380.3
(-0.8)
P 		336.5
(-3)
P 		455.4
(3)
P 		119
avr 357.9
(-3) 		381.4
(-1.8) 		374.9
(-2.1) 		475
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 422
1 2 3 4 5 6 range
A 519
(1.1)
P 		327
(-3)
P 		458.1
(-0.2)
P 		609.8
(3)
P 		593.9
(2.7)
P 		570.3
(2.2)
P 		283
B 464.3
(-2)
P 		441.4
(-3)
P 		500
(-0.5)
P 		583.9
(3)
P 		570.2
(2.4)
P 		525.5
(0.5)
P 		143
C 385
(-3)
P 		452.7
(-1.9)
P 		507.1
(-1)
P 		749
(3)
P 		389.7
(-2.9)
P 		529.2
(-0.6)
P 		364
avr 456.1
(-1.8) 		407
(-3) 		488.4
(-1) 		647.6
(3) 		517.9
(-0.2) 		541.7
(0.4) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 136.6
(3)
P 		91
(-1.2)
P 		111.5
(0.7)
P 		71.9
(-3)
P 		65
B 113.8
(3)
P 		85.1
(-2.7)
P 		83.8
(-3)
P 		102
(0.6)
P 		30
C 113.1
(2.4)
P 		109.3
(1.8)
P 		117.3
(3)
P 		76.8
(-3)
P 		41
avr 121.2
(3) 		95.1
(-1.2) 		104.2
(0.3) 		83.6
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 95.7
(-3)
P 		116.3
(-1.5)
P 		99.8
(-2.7)
P 		154.7
(1.2)
P 		179.2
(3)
P 		138.8
(0.1)
P 		84
B 161.6
(-0.8)
P 		146.9
(-1.6)
P 		121.4
(-3)
P 		154.7
(-1.2)
P 		231.7
(3)
P 		196
(1.1)
P 		110
C 142.7
(-1)
P 		138.1
(-1.6)
P 		129.1
(-2.6)
P 		150.6
(-0.1)
P 		126.1
(-3)
P 		177.1
(3)
P 		51
avr 133.3
(-1.4) 		133.8
(-1.4) 		116.8
(-3) 		153.3
(0.5) 		179
(3) 		170.6
(2.2) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182130_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1670
Sequence Type Exemplar sequence
Representative Public ID F59A3.4 NCBI
Target Description F59A3.4 /REP_DB=WormBase Gene ID /WP=CE11422 /TR=P91354 /GB=AAB37816.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059213 NCBI Caenorhabditis elegans F59A3.4 (F59A3.4) mRNA, complete cds. 11/11 None
SNAP00000013437 ENSEMBL cdna:SNAP chromosome:CEL140:I:5507442:5509172:-1 11/11 None
GENEFINDER00000013468 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5507442:5509172:-1 11/11 None
F59A3.4 ENSEMBL cdna:known chromosome:CEL140:I:5507126:5509172:-1 gene:F59A3.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5507441-5509172(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A3.4
Entrez Gene 172205 Entrez gene
SwissProt P91354 EMBL-EBI
WormBase CE11422 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7522.1.S1_S_AT similar to solute carrier family 39 (metal ion transporter), member 11 cfa
DROSOPHILA_2:1638312_AT dm
DROSGENOME1:154474_AT dm
CHICKEN:GGAAFFX.26205.1.S1_S_AT similar to solute carrier family 39 (metal ion transporter), member 11 gga
HU35KSUBA:AA044095_AT solute carrier family 39 (metal ion transporter), member 11 hs
HU35KSUBA:RC_AA039887_AT solute carrier family 39 (metal ion transporter), member 11 hs
U133_X3P:HS.3402.0.A1_3P_AT solute carrier family 39 (metal ion transporter), member 11 hs
HG-U133_PLUS_2:227046_AT solute carrier family 39 (metal ion transporter), member 11 hs
HG-U133B:227046_AT solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95B:51230_AT solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95D:75885_AT solute carrier family 39 (metal ion transporter), member 11 hs
HG-U133_PLUS_2:234567_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U133B:234567_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95C:54687_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95E:72067_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95D:72103_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95D:72938_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HG-U95D:85942_AT Solute carrier family 39 (metal ion transporter), member 11 hs
HU35KSUBC:RC_D20379_AT Solute carrier family 39 (metal ion transporter), member 11 hs
MOUSE430A_2:1424905_A_AT solute carrier family 39 (metal ion transporter), member 11 mm
MOE430A:1424905_A_AT solute carrier family 39 (metal ion transporter), member 11 mm
MOUSE430_2:1424905_A_AT solute carrier family 39 (metal ion transporter), member 11 mm
MG-U74BV2:114625_AT solute carrier family 39 (metal ion transporter), member 11 mm
MU19KSUBC:TC36076_AT Solute carrier family 39 (metal ion transporter), member 11, mRNA (cDNA clone MGC:25889 IMAGE:4216487) mm
MU19KSUBC:TC41071_AT Solute carrier family 39 (metal ion transporter), member 11, mRNA (cDNA clone MGC:25889 IMAGE:4216487) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37816 Hypothetical protein F59A3.4 [Caenorhabditis elegans] ref|NP_491614.1| F59A3.4 [Caenorhabditis elegans] 1.0E-179
blast AAB37816 Hypothetical protein F59A3.4 [Caenorhabditis elegans] ref|NP_491614.1| F59A3.4 [Caenorhabditis elegans] 1.0E-174
blast CAE67074 Hypothetical protein CBG12483 [Caenorhabditis briggsae] 1.0E-170
blast CAE67074 Hypothetical protein CBG12483 [Caenorhabditis briggsae] 1.0E-165
blast XP_852551 PREDICTED: similar to solute carrier family 39 (metal ion transporter), member 11 [Canis familiaris] 6.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 9.0E-26
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 3.4E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491614.1 8 10-32,39-61,74-93,176-198,213-235,242-264,269-286,298-320
F59A3.4 8 10-32,39-61,74-93,176-198,213-235,242-264,269-286,298-320
SNAP00000013437 8 10-32,37-59,69-88,171-193,208-230,237-259,264-281,293-315
GENEFINDER00000013468 8 10-32,39-61,74-93,176-198,213-235,242-264,269-286,298-320
Sequence
Target Sequence 
>C. ELEGANS:182130_S_AT
gagatgtcactgatgcaggctcgcgaggatcttgatgttgcagctctggcgcgatcagta
aatgaagaacatcgagaaagggatcgatctgttgatatgggatccgataagcgtcctgat
gtgattccagaagaagattaccgtcaatcatggaggcggattcttttgctaattttagct
gtaaccgttcacaatattcctgagggtctcgccgttggtgtcggattcggatcagcagga
aaaacaaaacaagcgacttttgaatcggcattcaatttagctattggaattggtcttcag
aatttcccagaaggacttgccgtttcactcccacttgcagcattcggtcattctaagctg
aaagcattctggtatggtcaactatctggaatggttgagccgattgctgctctattcgga
gctgctgctgtaatttttatggaacctgtgcttccatatgccctggcgtttgcggctgga
gccatgatctacgtggttgtcgatgatattatcccagaagcacaaagaaatggaaatgga
aagctggcatcccttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGTCACTGATGCAGGCTCGCG 617 395 370 Antisense
GGATCTTGATGTTGCAGCTCTGGCG 538 511 396 Antisense
ATGGGATCCGATAAGCGTCCTGATG 401 49 466 Antisense
GGAGGCGGATTCTTTTGCTAATTTT 522 513 521 Antisense
ACAATATTCCTGAGGGTCTCGCCGT 432 113 560 Antisense
TCTCGCCGTTGGTGTCGGATTCGGA 547 599 576 Antisense
TTCCCAGAAGGACTTGCCGTTTCAC 625 695 673 Antisense
CACTTGCAGCATTCGGTCATTCTAA 269 197 701 Antisense
GGTTGAGCCGATTGCTGCTCTATTC 573 507 762 Antisense
GGAGCCATGATCTACGTGGTTGTCG 598 521 847 Antisense
AATGGAAAGCTGGCATCCCTTGGAT 547 159 904 Antisense
Sequence Source Affymetrix Proprietary Database