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[182129_at]

Description F21E9.4 /REP_DB=WormBase Gene ID /WP=CE09528 /TR=O16588 /GB=AAC70879.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 40.8
(-3)
A 		58.9
(0.4)
A 		72.5
(3)
A 		54.7
(-0.4)
A 		32
B 58.4
(-2.9)
A 		100.1
(3)
A 		92
(1.8)
A 		58
(-3)
A 		42
C 99.8
(3)
A 		81.3
(1.3)
A 		66.7
(-0)
A 		34.5
(-3)
A 		65
avr 66.3
(0.3) 		80.1
(3) 		77.1
(2.4) 		49.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 30.1
(-1.5)
A 		28.1
(-1.8)
A 		62.2
(3)
A 		20.1
(-2.9)
A 		20.9
(-2.8)
A 		19.6
(-3)
A 		43
B 42.9
(0.6)
A 		47.1
(1)
A 		14.3
(-2.1)
A 		69.3
(3)
A 		4.1
(-3)
A 		54.2
(1.6)
A 		65
C 19.9
(-2.5)
A 		76.3
(2.6)
A 		14.7
(-3)
A 		80.3
(3)
A 		58.9
(1)
A 		68
(1.9)
A 		66
avr 31
(-2.4) 		50.5
(1.7) 		30.4
(-2.5) 		56.6
(3) 		28
(-3) 		47.3
(1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 14.9
(0.8)
A 		12.8
(-0.4)
A 		19
(3)
A 		8
(-3)
A 		11
B 18.6
(0)
A 		24.7
(3)
A 		21.3
(1.3)
A 		12.4
(-3)
A 		12
C 33
(3)
A 		23.4
(0.9)
A 		23.2
(0.8)
A 		5.8
(-3)
A 		27
avr 22.2
(3) 		20.3
(2.2) 		21.2
(2.6) 		8.7
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.6
(-2.5)
A 		10
(0.5)
A 		13.6
(3)
A 		5.1
(-2.8)
A 		6.3
(-2)
A 		4.8
(-3)
A 		9
B 14.9
(1.3)
A 		15.7
(1.5)
A 		3.5
(-2.4)
A 		18.4
(2.4)
A 		1.7
(-3)
A 		20.2
(3)
A 		19
C 7.4
(-1.9)
A 		23.3
(3)
A 		3.7
(-3)
A 		16.1
(0.8)
A 		19.1
(1.7)
A 		22.7
(2.8)
A 		20
avr 9.3
(-1.5) 		16.3
(3) 		6.9
(-3) 		13.2
(1) 		9
(-1.7) 		15.9
(2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18538
Sequence Type Exemplar sequence
Representative Public ID F21E9.4 NCBI
Target Description F21E9.4 /REP_DB=WormBase Gene ID /WP=CE09528 /TR=O16588 /GB=AAC70879.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075846 NCBI Caenorhabditis elegans F21E9.4 (F21E9.4) mRNA, complete cds. 11/11 None
SNAP00000024978 ENSEMBL cdna:SNAP chromosome:CEL140:X:1343919:1344352:-1 11/11 None
GENEFINDER00000024987 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1343919:1344352:-1 11/11 None
F21E9.4 ENSEMBL cdna:known chromosome:CEL140:X:1343832:1344405:-1 gene:F21E9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1343918-1344352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21E9.4
Entrez Gene 180476 Entrez gene
SwissProt O16588 EMBL-EBI
WormBase CE09528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70879 Hypothetical protein F21E9.4 [Caenorhabditis elegans] ref|NP_508247.1| F21E9.4 [Caenorhabditis elegans] 5.0E-69
Sequence
Target Sequence 
>C. ELEGANS:182129_AT
gctcagccgagcaaatgactgccaagaagttctcaaccaagacgtcatctccgatcccgg
aactccaggaagtcttcgcaaccgttgcagccgacgagtttccattccacaaggctaata
cccagccgctggctatctacttgaacatcagcaccccccaagactgtatccacaagatct
tcagaatgacgatctccttctgctcccaagtggaatgccagaacatggaggcaatgcaga
agatctgcaacaccaccacaccaaccatcaaacacgtcggggagctctgctgccccgagt
tttttgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCAGCCGAGCAAATGACTGCCAA 556 301 53 Antisense
AAGTTCTCAACCAAGACGTCATCTC 110 157 79 Antisense
GATCCCGGAACTCCAGGAAGTCTTC 696 403 105 Antisense
GGAAGTCTTCGCAACCGTTGCAGCC 529 531 120 Antisense
CACAAGGCTAATACCCAGCCGCTGG 650 193 160 Antisense
CCGCTGGCTATCTACTTGAACATCA 324 263 178 Antisense
CCCCCAAGACTGTATCCACAAGATC 120 261 207 Antisense
TCAGAATGACGATCTCCTTCTGCTC 655 623 233 Antisense
CACACCAACCATCAAACACGTCGGG 707 193 309 Antisense
ATCAAACACGTCGGGGAGCTCTGCT 146 27 319 Antisense
TCTGCTGCCCCGAGTTTTTTGAGCA 166 609 338 Antisense
Sequence Source Affymetrix Proprietary Database