[Home] | [Total List]

[182128_at]

Description F23D12.3 /REP_DB=WormBase Gene ID /WP=CE05701 /TR=Q19759 /GB=CAA94915.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 267.1
(2.1)
P 		288.8
(3)
A 		244
(1.2)
A 		137.8
(-3)
A 		151
B 304.8
(3)
P 		201.3
(-0.2)
A 		275.5
(2.1)
A 		110.4
(-3)
A 		194
C 307.3
(3)
P 		193
(-1.4)
A 		200.2
(-1.1)
A 		150.9
(-3)
A 		156
avr 293.1
(3) 		227.7
(0.5) 		239.9
(1) 		133
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 193.2
(-3)
A 		208.2
(-2.4)
P 		333.5
(3)
P 		255.3
(-0.3)
P 		232.4
(-1.3)
P 		250.7
(-0.5)
P 		140
B 154.7
(-3)
M 		214.4
(-1.3)
P 		370.1
(3)
P 		245.1
(-0.5)
P 		221.9
(-1.1)
P 		244.7
(-0.5)
P 		215
C 136.7
(-3)
A 		362.8
(3)
P 		315.1
(1.7)
P 		261.5
(0.3)
P 		178.9
(-1.9)
P 		242.8
(-0.2)
P 		226
avr 161.5
(-3) 		261.8
(0.4) 		339.6
(3) 		254
(0.1) 		211.1
(-1.3) 		246.1
(-0.1) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 97.3
(3)
P 		62.7
(0.3)
A 		63.8
(0.4)
A 		20.2
(-3)
A 		77
B 97.2
(3)
P 		49.7
(-0.9)
A 		63.8
(0.3)
A 		23.5
(-3)
A 		74
C 101.7
(3)
P 		55.5
(-0.6)
A 		69.8
(0.5)
A 		25.4
(-3)
A 		76
avr 98.7
(3) 		56
(-0.4) 		65.8
(0.4) 		23
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 35.6
(-3)
A 		74.1
(3)
P 		72.6
(2.8)
P 		64.8
(1.6)
P 		70.1
(2.4)
P 		61
(1)
P 		39
B 53.8
(-3)
M 		71.4
(-0.2)
P 		89.9
(2.8)
P 		64.9
(-1.2)
P 		90.2
(2.8)
P 		91.2
(3)
P 		37
C 50.7
(-3)
A 		110.7
(3)
P 		80.2
(-0)
P 		52.6
(-2.8)
P 		57.9
(-2.3)
P 		81.3
(0.1)
P 		60
avr 46.7
(-3) 		85.4
(3) 		80.9
(2.3) 		60.8
(-0.8) 		72.7
(1) 		77.8
(1.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17692
Sequence Type Exemplar sequence
Representative Public ID F23D12.3 NCBI
Target Description F23D12.3 /REP_DB=WormBase Gene ID /WP=CE05701 /TR=Q19759 /GB=CAA94915.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078002 NCBI Caenorhabditis elegans F23D12.3 (F23D12.3) mRNA, complete cds. 11/11 None
SNAP00000042573 ENSEMBL cdna:SNAP chromosome:CEL140:X:14442540:14443198:1 11/11 None
GENEFINDER00000042582 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14442540:14443198:1 11/11 None
F23D12.3 ENSEMBL cdna:known chromosome:CEL140:X:14442540:14443198:1 gene:F23D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14442539-14443198(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.3
Entrez Gene 184896 Entrez gene
SwissProt Q19759 EMBL-EBI
WormBase CE05701 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94915 Hypothetical protein F23D12.3 [Caenorhabditis elegans] ref|NP_510403.1| F23D12.3 [Caenorhabditis elegans] 1.0E-116
blast CAB04514 Hypothetical protein F58E10.7 [Caenorhabditis elegans] ref|NP_506477.1| F58E10.7 [Caenorhabditis elegans] 4.0E-67
blast CAE66172 Hypothetical protein CBG11410 [Caenorhabditis briggsae] 3.0E-55
Sequence
Target Sequence 
>C. ELEGANS:182128_AT
tgtctgccctttcaaactttagtttcagagataatcaagctccgcctttcgatttggagc
ccatcggactccacctttttcagctcgtatataagagagtttggagtgaaactctttcat
tcattcatctgaaaatgatgaacaaaatcaccgttattctcgtctctctcctcatcctgg
cttcaggctacaaagtccgtccatctgccaagaacgccgttcaagatgctcatgaccaac
tagccaagcatattcgatgttgggaggaggttgatgacgacgatcaatctaaaggataca
ctctaagcgagccaatatacgagctatgcagcttcatgccggatccaaaagactacaaca
aattttacgtcaatggagttgatatggagtccgatgtctacaccaactttttggcgatgt
acgccaacgcacttgagggatatgcagtcttgaacgtatgcatccaagaagccttccaat
ttcacgctgccaaacacccgtctcaagtcagtctccgctgtctctgcaaacgggacggat
gcaatctcccaatgagcttcacaaacttcttagactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTGCCCTTTCAAACTTTAGTTT 100 543 14 Antisense
TCAAGCTCCGCCTTTCGATTTGGAG 33 633 48 Antisense
CTGGCTTCAGGCTACAAAGTCCGTC 370 241 190 Antisense
GATGCTCATGACCAACTAGCCAAGC 394 413 238 Antisense
TACGAGCTATGCAGCTTCATGCCGG 519 647 331 Antisense
TATGGAGTCCGATGTCTACACCAAC 635 653 396 Antisense
ATGTACGCCAACGCACTTGAGGGAT 456 47 430 Antisense
CAAGAAGCCTTCCAATTTCACGCTG 418 185 478 Antisense
CGCTGTCTCTGCAAACGGGACGGAT 640 253 529 Antisense
GATGCAATCTCCCAATGAGCTTCAC 255 413 551 Antisense
GAGCTTCACAAACTTCTTAGACTAC 375 387 567 Antisense
Sequence Source Affymetrix Proprietary Database