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[182127_at]

Description F15A8.4 /REP_DB=WormBase Gene ID /WP=CE07068 /TR=O02145 /GB=AAB52850.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 136.3
(3)
P 		56.6
(-3)
A 		71
(-1.9)
A 		95.3
(-0.1)
A 		80
B 132.3
(3)
P 		90.7
(0.2)
M 		56.7
(-2)
A 		41.7
(-3)
A 		91
C 178.4
(3)
P 		13.5
(-3)
A 		67.3
(-1)
A 		112.5
(0.6)
P 		165
avr 149
(3) 		53.6
(-3) 		65
(-2.3) 		83.2
(-1.1) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 87.1
(1.1)
P 		107.6
(3)
P 		92.9
(1.6)
P 		49.1
(-2.5)
A 		43.7
(-3)
P 		65.5
(-1)
A 		64
B 149.9
(3)
P 		108.8
(1.1)
P 		55.4
(-1.4)
P 		22.3
(-3)
A 		94.4
(0.4)
M 		39.6
(-2.2)
A 		128
C 64.4
(-0.7)
P 		114.9
(3)
P 		90.3
(1.2)
P 		92.7
(1.4)
P 		47.1
(-1.9)
A 		32.1
(-3)
A 		83
avr 100.5
(2.1) 		110.4
(3) 		79.5
(0.1) 		54.7
(-2.2) 		61.7
(-1.5) 		45.7
(-3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 49.6
(3)
P 		12.3
(-3)
A 		18.6
(-2)
A 		14
(-2.7)
A 		37
B 42.2
(3)
P 		22.4
(-0.6)
M 		13.1
(-2.2)
A 		8.9
(-3)
A 		33
C 59.1
(3)
P 		3.9
(-3)
A 		23.5
(-0.9)
A 		19
(-1.4)
P 		55
avr 50.3
(3) 		12.9
(-3) 		18.4
(-2.1) 		14
(-2.8) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 16.1
(-2.2)
P 		38.3
(3)
P 		20.2
(-1.2)
P 		12.5
(-3)
A 		13.2
(-2.8)
P 		16
(-2.2)
A 		26
B 52.2
(3)
P 		36.2
(0.9)
P 		13.4
(-2)
P 		5.9
(-3)
A 		38.4
(1.2)
M 		14.8
(-1.8)
A 		46
C 23.9
(0.2)
P 		35.1
(3)
P 		23
(0)
P 		18.6
(-1.1)
P 		15.2
(-1.9)
A 		10.8
(-3)
A 		24
avr 30.7
(1.6) 		36.5
(3) 		18.9
(-1.4) 		12.3
(-3) 		22.3
(-0.5) 		13.9
(-2.6) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182127_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15988
Sequence Type Exemplar sequence
Representative Public ID F15A8.4 NCBI
Target Description F15A8.4 /REP_DB=WormBase Gene ID /WP=CE07068 /TR=O02145 /GB=AAB52850.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076358(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076358 NCBI Caenorhabditis elegans F15A8.4 (F15A8.4) mRNA, complete cds. 11/11 None
F15A8.4 ENSEMBL cdna:known chromosome:CEL140:X:4408112:4409036:1 gene:F15A8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015911 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4408397-4409037(+) 99.48 99.48
Public Domain and Genome References
Gene Title
Ensembl F15A8.4
Entrez Gene 184519 Entrez gene
SwissProt O02145 EMBL-EBI
WormBase CE07068 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508759 F15A8.4 [Caenorhabditis elegans] gb|AAB52850.1| Hypothetical protein F15A8.4 [Caenorhabditis elegans] 3.0E-67
blast CAE68592 Hypothetical protein CBG14462 [Caenorhabditis briggsae] 7.0E-35
blast CAA91282 Hypothetical protein E04D5.2 [Caenorhabditis elegans] ref|NP_496241.1| E04D5.2 [Caenorhabditis elegans] 4.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508759.1 2 28-50,65-87
F15A8.4 2 28-50,65-87
Sequence
Target Sequence 
>C. ELEGANS:182127_AT
cgctcgagttcaagctgctcaggagattcgagagcagcaacacagactacggtgcgctgt
aaaaacgactgtagtgataatctcagcgtatctggcctgcaacctcgtcaatttcatttt
gtacattttggagacattccgaagaagctggattattgaagcaaatggagcatttaaacc
attctacgtcataattagcgaccttggatcaaatctctttgtgttttcgtcaacaatcag
aatatttatatactataaatataatcacgaaattaaaaagcttatcaaagacatctgggt
ggtcaattatatcatacaacaggcacaacctccaaaggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTCGAGTTCAAGCTGCTCAGGAG 669 255 24 Antisense
TCAGGAGATTCGAGAGCAGCAACAC 256 623 42 Antisense
GCAGCAACACAGACTACGGTGCGCT 710 311 57 Antisense
CGGTGCGCTGTAAAAACGACTGTAG 387 243 73 Antisense
GTGATAATCTCAGCGTATCTGGCCT 544 483 97 Antisense
GCAACCTCGTCAATTTCATTTTGTA 338 319 122 Antisense
GGAGCATTTAAACCATTCTACGTCA 419 519 190 Antisense
AGCGACCTTGGATCAAATCTCTTTG 303 79 220 Antisense
AATCTCTTTGTGTTTTCGTCAACAA 458 169 235 Antisense
ACATCTGGGTGGTCAATTATATCAT 156 105 314 Antisense
ACAACAGGCACAACCTCCAAAGGCT 348 111 339 Antisense
Sequence Source Affymetrix Proprietary Database