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[182126_at]

Description M01D7.1 /REP_DB=WormBase Gene ID /WP=CE12260 /TR=O01968 /GB=AAB58068.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 4.6
(-3)
A 		7.4
(3)
A 		5.7
(-0.6)
A 		6
(0)
A 		3
B 16.8
(2.6)
A 		2.9
(-3)
A 		3.2
(-2.9)
A 		17.9
(3)
A 		15
C 51
(3)
A 		3.6
(-2.9)
A 		2.6
(-3)
A 		51.2
(3)
A 		49
avr 24.1
(2.7) 		4.6
(-2.8) 		3.8
(-3) 		25
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5.4
(-2.4)
A 		3.3
(-2.8)
A 		7.1
(-2.1)
A 		31.1
(2.7)
A 		32.8
(3)
A 		2.4
(-3)
A 		30
B 33.2
(3)
A 		10.9
(-1.5)
A 		3.7
(-2.9)
A 		3.2
(-3)
A 		7.3
(-2.2)
A 		13.1
(-1)
A 		30
C 3.8
(-2.6)
A 		10.9
(-0.5)
A 		14.3
(0.6)
A 		2.5
(-3)
A 		20.8
(2.5)
A 		22.4
(3)
A 		20
avr 14.1
(-0.1) 		8.4
(-3) 		8.4
(-3) 		12.3
(-1) 		20.3
(3) 		12.6
(-0.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.7
(3)
A 		1.6
(2.3)
A 		1.5
(1.5)
A 		0.9
(-3)
A 		1
B 5.4
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		3.8
(1)
A 		5
C 16.9
(3)
A 		1
(-3)
A 		0.9
(-3)
A 		8.6
(-0.1)
A 		16
avr 8
(3) 		1.1
(-2.9) 		1
(-3) 		4.4
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-2.7)
A 		1.2
(-2.6)
A 		1.5
(-2.4)
A 		7.9
(1.7)
A 		9.9
(3)
A 		0.6
(-3)
A 		9
B 11.5
(3)
A 		3.6
(-1.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		3
(-1.8)
A 		4.9
(-0.7)
A 		11
C 1.4
(-2.2)
A 		3.3
(-0.6)
A 		3.6
(-0.3)
A 		0.5
(-3)
A 		6.7
(2.3)
A 		7.5
(3)
A 		7
avr 4.6
(0.5) 		2.7
(-2.1) 		2
(-3) 		3.1
(-1.5) 		6.5
(3) 		4.3
(0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.281
Sequence Type Exemplar sequence
Representative Public ID M01D7.1 NCBI
Target Description M01D7.1 /REP_DB=WormBase Gene ID /WP=CE12260 /TR=O01968 /GB=AAB58068.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058509 NCBI Caenorhabditis elegans M01D7.1 (M01D7.1) mRNA, complete cds. 11/11 None
M01D7.1 ENSEMBL cdna:known chromosome:CEL140:I:1857893:1860579:-1 gene:M01D7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009600 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1857892-1860579(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01D7.1
Entrez Gene 187367 Entrez gene
SwissProt O01968 EMBL-EBI
WormBase CE12260 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB58068 Hypothetical protein M01D7.1 [Caenorhabditis elegans] ref|NP_490910.1| M01D7.1 [Caenorhabditis elegans] 0.0
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 7.0E-79
blast CAB04160 Hypothetical protein F21D9.1 [Caenorhabditis elegans] ref|NP_507748.1| F21D9.1 [Caenorhabditis elegans] 8.0E-72
Sequence
Target Sequence 
>C. ELEGANS:182126_AT
gattcagtctcgacttctggattgaatggttttgcaagagttcggcggacaagaaaatat
ttccaataattaaatacacaaaattaccaaaactttggaagtttttaaatatattcaacg
aactctttttgatcgaccatgttgacgtaatgatcgacggagataaactttttggagatt
atcgattcttactaagtcacccattgatgaaaaaatgccattacattgaaattgttggaa
agacattttgtgtttcgacagaagacattcaatttgtactaaacaagattaatgtcagct
atggattagttttttatagtcagtttggtttcaatcacagtcttatatcccgaattcctc
gcctggatatattctacgcagaaaaaatcacattggaggagttaatgaaaatggattgta
aagtaatcaagttgagcaatcatcaattccaacctacacttatcaataaatttattcgtt
gttggttgatgggggcaatgccgaaactaaaaagacttcgttggaattcgcattgtcgtc
tttttcagcctacggacatgttgcatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGTCTCGACTTCTGGATTGA 408 431 404 Antisense
GGTTTTGCAAGAGTTCGGCGGACAA 113 505 431 Antisense
GAACTCTTTTTGATCGACCATGTTG 363 349 523 Antisense
GATTCTTACTAAGTCACCCATTGAT 322 431 587 Antisense
GTCAGTTTGGTTTCAATCACAGTCT 181 467 722 Antisense
ATCACAGTCTTATATCCCGAATTCC 486 25 737 Antisense
TCCTCGCCTGGATATATTCTACGCA 695 591 759 Antisense
TCATCAATTCCAACCTACACTTATC 14 621 843 Antisense
GTTGGTTGATGGGGGCAATGCCGAA 145 435 884 Antisense
GAATTCGCATTGTCGTCTTTTTCAG 73 325 927 Antisense
TTCAGCCTACGGACATGTTGCATGG 64 687 947 Antisense
Sequence Source Affymetrix Proprietary Database