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[182124_at]

Description C29A12.2 /REP_DB=WormBase Gene ID /WP=CE05327 /TR=Q18293 /GB=CAA98245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 2
(-3)
A 		7.5
(-2.7)
A 		21.8
(-2.1)
A 		130.2
(3)
P 		128
B 22.8
(3)
A 		4.6
(-3)
A 		12.4
(-0.4)
A 		4.9
(-2.9)
A 		18
C 2.8
(-2.9)
A 		2.9
(-2.9)
A 		0.7
(-3)
A 		107.6
(3)
P 		107
avr 9.2
(-2.7) 		5
(-3) 		11.6
(-2.5) 		80.9
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.1
(2.1)
A 		4.5
(3)
A 		4
(1.9)
A 		1.7
(-3)
A 		3.2
(0.2)
A 		3.4
(0.6)
A 		3
B 2.6
(-0.9)
A 		3.1
(0.2)
A 		1.7
(-2.8)
A 		1.6
(-3)
A 		1.6
(-3)
A 		4.4
(3)
A 		3
C 1.6
(-2.9)
A 		23
(3)
A 		5
(-2)
A 		2.9
(-2.6)
A 		1.3
(-3)
A 		1.7
(-2.9)
A 		22
avr 2.8
(-2.4) 		10.2
(3) 		3.6
(-1.8) 		2.1
(-2.9) 		2
(-3) 		3.2
(-2.1) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 0.7
(-3)
A 		1.6
(-2.7)
A 		5.7
(-1.4)
A 		19.1
(3)
P 		18
B 7.3
(3)
A 		1.1
(-2.9)
A 		2.9
(-1.2)
A 		1
(-3)
A 		6
C 0.9
(-2.8)
A 		0.8
(-2.8)
A 		0.3
(-3)
A 		18.1
(3)
P 		18
avr 3
(-2.1) 		1.2
(-3) 		3
(-2.1) 		12.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-1)
A 		1.6
(3)
A 		0.9
(-0.5)
A 		0.4
(-3)
A 		1
(-0)
A 		0.8
(-1)
A 		1
B 0.9
(-0.5)
A 		1
(-0)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0.7
(-1.5)
A 		1.6
(3)
A 		1
C 0.6
(-2.8)
A 		7
(3)
A 		1.3
(-2.2)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		0.6
(-2.8)
A 		7
avr 0.8
(-2.3) 		3.2
(3) 		0.9
(-2.1) 		0.5
(-3) 		0.7
(-2.6) 		1
(-1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13341
Sequence Type Exemplar sequence
Representative Public ID C29A12.2 NCBI
Target Description C29A12.2 /REP_DB=WormBase Gene ID /WP=CE05327 /TR=Q18293 /GB=CAA98245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008270 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10810251:10814884:-1 10/11 None
C29A12.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:10811596:10813662:-1 gene:C29A12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072161 1/11 Cross Hyb Matching Probes None
SNAP00000000278 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000283 1/11 Cross Hyb Matching Probes None
F29G9.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10811595-10812292(-) 100.0 100.0
Public Domain and Genome References
Ensembl C29A12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19547 hypothetical protein C29A12.2 - Caenorhabditis elegans 1.0E-89
blast AAK68353 Hypothetical protein F29G9.7 [Caenorhabditis elegans] ref|NP_504562.2| F29G9.7 [Caenorhabditis elegans] 8.0E-82
blast CAB07665 Hypothetical protein T10C6.9 [Caenorhabditis elegans] ref|NP_507029.1| T10C6.9 [Caenorhabditis elegans] 1.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008270 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:182124_AT
gcacagatttgagattcgtcacactagtcgtggggaatttgatttagaagtgctgaaatt
gggattaaatgtgaagaaatggaataaaaatctcagaaatggatgttatataatggacag
tcatgaaaatccctttctcctggacactcgtaaagacctcgatgtgattaaatccgacgg
aacgcttgcaacgattgtgaatagacctgatacatttcagttcattgtctggaggcacca
cgttttcaagatctggagtaattccggatctacgttttccggatttaccatttccggatc
taccatttccggatctacgatttccggatctggcaccgtgccaacgcacaaaacgctttt
ttattcattcgacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGATTTGAGATTCGTCACACT 630 315 246 Antisense
GTCATGAAAATCCCTTTCTCCTGGA 454 465 365 Antisense
GGACACTCGTAAAGACCTCGATGTG 88 527 387 Antisense
AGTTCATTGTCTGGAGGCACCACGT 302 63 464 Antisense
TCTGGAGTAATTCCGGATCTACGTT 424 607 497 Antisense
GATCTACGTTTTCCGGATTTACCAT 33 419 512 Antisense
GATTTACCATTTCCGGATCTACCAT 306 429 527 Antisense
ATCTACCATTTCCGGATCTACGATT 136 33 543 Antisense
TCTACGATTTCCGGATCTGGCACCG 104 615 559 Antisense
CGTGCCAACGCACAAAACGCTTTTT 315 239 582 Antisense
AACGCTTTTTTATTCATTCGACGCA 500 145 597 Antisense
Sequence Source Affymetrix Proprietary Database