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[182122_at]

Description C15H9.3 /REP_DB=WormBase Gene ID /WP=CE03995 /TR=Q18029 /GB=AAB52663.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 113.7
(-0.2)
A 		63
(-2.9)
A 		60.9
(-3)
A 		176
(3)
A 		115
B 161.5
(3)
A 		33.8
(-2.7)
A 		61.2
(-1.5)
A 		28.2
(-3)
A 		133
C 105
(0.4)
P 		15.6
(-3)
A 		52.1
(-1.6)
A 		172.9
(3)
A 		157
avr 126.7
(3) 		37.5
(-3) 		58.1
(-1.6) 		125.7
(2.9) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 99.5
(3)
A 		62.3
(0.6)
A 		96.3
(2.8)
A 		85.4
(2.1)
A 		91.6
(2.5)
A 		5.1
(-3)
A 		94
B 108.8
(3)
A 		89.5
(1.6)
A 		52.5
(-1.2)
A 		31.4
(-2.8)
A 		79
(0.8)
A 		28.5
(-3)
A 		80
C 117.5
(2.3)
A 		129.6
(3)
P 		25.9
(-3)
A 		91.9
(0.8)
A 		39.5
(-2.2)
A 		29.8
(-2.8)
A 		104
avr 108.6
(3) 		93.8
(2) 		58.2
(-0.5) 		69.6
(0.3) 		70
(0.4) 		21.1
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 41.4
(3)
A 		13.7
(-3)
A 		15.9
(-2.5)
A 		25.8
(-0.4)
A 		28
B 51.5
(3)
A 		8.3
(-2.7)
A 		14.2
(-1.9)
A 		6
(-3)
A 		46
C 34.8
(3)
P 		4.5
(-3)
A 		18.2
(-0.3)
A 		29.2
(1.9)
A 		30
avr 42.6
(3) 		8.8
(-3) 		16.1
(-1.7) 		20.3
(-1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 18.4
(0.9)
A 		22.2
(1.8)
A 		21
(1.5)
A 		21.7
(1.7)
A 		27.6
(3)
A 		1.2
(-3)
A 		26
B 37.8
(3)
A 		29.8
(1.4)
A 		12.8
(-2.1)
A 		8.3
(-3)
A 		32.1
(1.8)
A 		10.6
(-2.5)
A 		30
C 43.6
(3)
A 		39.5
(2.3)
P 		6.6
(-3)
A 		18.5
(-1.1)
A 		12.8
(-2)
A 		10
(-2.4)
A 		37
avr 33.3
(3) 		30.5
(2.4) 		13.5
(-1.6) 		16.2
(-0.9) 		24.2
(0.9) 		7.3
(-3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16917
Sequence Type Exemplar sequence
Representative Public ID C15H9.3 NCBI
Target Description C15H9.3 /REP_DB=WormBase Gene ID /WP=CE03995 /TR=Q18029 /GB=AAB52663.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076625 NCBI Caenorhabditis elegans C15H9.3 (C15H9.3) mRNA, complete cds. 11/11 None
SNAP00000042805 ENSEMBL cdna:SNAP chromosome:CEL140:X:6115762:6118009:1 11/11 None
GENEFINDER00000042809 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6115762:6118009:1 11/11 None
C15H9.3 ENSEMBL cdna:known chromosome:CEL140:X:6115762:6118009:1 gene:C15H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6115761-6118009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H9.3
Entrez Gene 182642 Entrez gene
SwissProt Q18029 EMBL-EBI
WormBase CE03995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52663 Hypothetical protein C15H9.3 [Caenorhabditis elegans] ref|NP_509026.1| C15H9.3 [Caenorhabditis elegans] 1.0E-179
blast CAE68873 Hypothetical protein CBG14836 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509026.1 7 4-26,35-57,92-114,127-149,164-186,245-267,277-299
C15H9.3 7 4-26,35-57,92-114,127-149,164-186,245-267,277-299
SNAP00000042805 7 4-26,35-57,92-114,127-149,164-186,245-267,277-299
GENEFINDER00000042809 7 4-26,35-57,92-114,127-149,164-186,245-267,277-299
Sequence
Target Sequence 
>C. ELEGANS:182122_AT
tatggaactctgtactatgcgcgctttactcagaaaaagacaatttttgctatcatcgga
atcgtctttttatccatgctgtctgtgtgctacttatggtctccagagtttccaattatt
ttccatcccgagttttggggttggacggaagaacgaaacaaacctctggttaactttttc
ttttatcttaactatgttgtacagggaattgttttcttttgcttgggtctcactgatatt
cttattgtttacaaactcagcacaatcaaggaatcggtcttttcaaatgagaaaagcgcc
accgtcgcaccagcagaaatgatgcaaaagatgcaggtgtcggtggtgaatagcggaaac
atgatggctccccggaagacttcacgggtctcaaccgaactcaaagtctctataaacttc
atcatcgtatcaatgtttcttcttgttcagacgctcatctacaatatttgtacactatac
gaagacaacaacctttgtctgttcctactattcattgcaccaattttccgtggaagtaaa
tgccttgcctacatggtctccggaagtgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGAACTCTGTACTATGCGCGCT 410 655 340 Antisense
TTATCCATGCTGTCTGTGTGCTACT 196 681 409 Antisense
GTGTGCTACTTATGGTCTCCAGAGT 325 487 424 Antisense
CAATTATTTTCCATCCCGAGTTTTG 329 177 452 Antisense
TTCTTTTGCTTGGGTCTCACTGATA 671 687 553 Antisense
GACTTCACGGGTCTCAACCGAACTC 568 361 717 Antisense
ATGTTTCTTCTTGTTCAGACGCTCA 213 47 772 Antisense
ACAACAACCTTTGTCTGTTCCTACT 40 111 824 Antisense
TCTGTTCCTACTATTCATTGCACCA 164 609 837 Antisense
AGTAAATGCCTTGCCTACATGGTCT 690 59 874 Antisense
CCTACATGGTCTCCGGAAGTGCACT 654 267 887 Antisense
Sequence Source Affymetrix Proprietary Database