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[182121_at]

Description F11C7.2 /REP_DB=WormBase Gene ID /WP=CE07051 /TR=Q19349 /GB=AAC69014.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 43      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1678
1 2 3 4 range
A 1829.6
(3)
P 		1567.6
(2)
P 		1558.7
(1.9)
P 		330.1
(-3)
P 		1500
B 1925.7
(3)
P 		1496.8
(1.5)
P 		1543.2
(1.6)
P 		247.3
(-3)
P 		1678
C 1793
(3)
P 		1461.7
(1.7)
P 		1343
(1.2)
P 		295.6
(-3)
P 		1497
avr 1849.4
(3) 		1508.7
(1.7) 		1481.6
(1.6) 		291
(-3) 		1558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1030
1 2 3 4 5 6 range
A 1175.4
(-0.4)
P 		1124.9
(-0.7)
P 		1757.1
(3)
P 		1334.3
(0.5)
P 		994.2
(-1.4)
P 		726.9
(-3)
P 		1030
B 986.7
(-2.5)
P 		1283
(-0)
P 		1649
(3)
P 		1404.3
(1)
P 		1170.1
(-0.9)
P 		920.1
(-3)
P 		729
C 847.7
(-2.4)
P 		1195.4
(0.9)
P 		1420.4
(3)
P 		1309.6
(2)
P 		784
(-2.9)
P 		778.6
(-3)
P 		642
avr 1003.3
(-1.5) 		1201.1
(-0.1) 		1608.8
(3) 		1349.4
(1.1) 		982.8
(-1.7) 		808.5
(-3) 		800
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 666.1
(3)
P 		340.3
(-0.2)
P 		407.5
(0.5)
P 		48.3
(-3)
P 		618
B 614.1
(3)
P 		369.7
(0.4)
P 		357.6
(0.3)
P 		52.7
(-3)
P 		561
C 593.5
(3)
P 		420.3
(1.1)
P 		468.1
(1.6)
P 		49.8
(-3)
P 		544
avr 624.6
(3) 		376.8
(0.4) 		411.1
(0.8) 		50.3
(-3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 298
1 2 3 4 5 6 range
A 216.7
(-1.9)
P 		400.1
(3)
P 		382.7
(2.5)
P 		338.4
(1.3)
P 		300
(0.3)
P 		177
(-3)
P 		223
B 343.3
(-3)
P 		427
(0.8)
P 		400.4
(-0.4)
P 		372
(-1.7)
P 		475.4
(3)
P 		343.1
(-3)
P 		132
C 314.2
(0.3)
P 		364.7
(3)
P 		361.5
(2.8)
P 		263.4
(-2.5)
P 		253.7
(-3)
P 		260.6
(-2.6)
P 		111
avr 291.4
(-1.6) 		397.3
(3) 		381.5
(2.3) 		324.6
(-0.2) 		343
(0.6) 		260.2
(-3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18034
Sequence Type Exemplar sequence
Representative Public ID F11C7.2 NCBI
Target Description F11C7.2 /REP_DB=WormBase Gene ID /WP=CE07051 /TR=Q19349 /GB=AAC69014.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078420 NCBI Caenorhabditis elegans F11C7.2 (F11C7.2) mRNA, complete cds. 11/11 None
SNAP00000033126 ENSEMBL cdna:SNAP chromosome:CEL140:X:17396749:17397679:1 11/11 None
GENEFINDER00000033137 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17396749:17397679:1 11/11 None
F11C7.2 ENSEMBL cdna:known chromosome:CEL140:X:17396749:17397691:1 gene:F11C7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17396747-17397678(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C7.2
Entrez Gene 181769 Entrez gene
SwissProt Q19349 EMBL-EBI
WormBase CE07051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69014 Hypothetical protein F11C7.2 [Caenorhabditis elegans] ref|NP_510821.1| F11C7.2 [Caenorhabditis elegans] 4.0E-57
blast CAE69674 Hypothetical protein CBG15924 [Caenorhabditis briggsae] 9.0E-31
blast CAE69673 Hypothetical protein CBG15923 [Caenorhabditis briggsae] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:182121_AT
tgtgatatttctgactttccttgccactaccgccctagcaggaacatggactgattgggg
agcgtgggcagatacttgtgtgaattgtccgggagccacttaccgtgggcgcagtcgtgt
gtgtatcccaggagcggatatgagtggatgcacaggagaccgtctcgagaaagagatctg
taactgcccacttgaagcagaatggggagagtgggaagaatgggctgcatgcgataatga
gtgtggtttctgcggaacgcacgcacgtaccagaacatgcgaactccttcctgagtgccc
acttgcactttgcacaggagatgacaacgaatcagagccatgcagtgatacagacaaggt
ctgccttgcaccaagcccgtcgtgctgcaatggatacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGATATTTCTGACTTTCCTTGCC 20 557 24 Antisense
ACTACCGCCCTAGCAGGAACATGGA 456 101 49 Antisense
GGAGCGTGGGCAGATACTTGTGTGA 538 521 82 Antisense
GTGAATTGTCCGGGAGCCACTTACC 37 461 103 Antisense
TGGGCGCAGTCGTGTGTGTATCCCA 137 555 129 Antisense
AGATCTGTAACTGCCCACTTGAAGC 594 65 197 Antisense
GTGTGGTTTCTGCGGAACGCACGCA 73 489 264 Antisense
ACGTACCAGAACATGCGAACTCCTT 341 91 288 Antisense
GCCCACTTGCACTTTGCACAGGAGA 218 287 320 Antisense
AGACAAGGTCTGCCTTGCACCAAGC 217 73 375 Antisense
GCCCGTCGTGCTGCAATGGATACAA 139 287 398 Antisense
Sequence Source Affymetrix Proprietary Database