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[182120_at]

Description Y87G2A.2 /REP_DB=WormBase Gene ID /WP=CE24684 /TR=Q9U1Q5 /GB=CAB60427.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 67      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 99      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15772
1 2 3 4 range
A 721.1
(-3)
P 		1014.6
(-2.9)
P 		1265.9
(-2.8)
P 		16492.8
(3)
P 		15772
B 813.7
(-3)
P 		799
(-3)
P 		1085.5
(-2.8)
P 		10429.1
(3)
P 		9630
C 749.7
(-3)
P 		763.1
(-3)
P 		1268.8
(-2.8)
P 		16240.9
(3)
P 		15491
avr 761.5
(-3) 		858.9
(-3) 		1206.7
(-2.8) 		14387.6
(3) 		13626

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4384
1 2 3 4 5 6 range
A 1634.4
(-0.4)
P 		465.2
(-2.9)
P 		732.6
(-2.3)
P 		426.2
(-3)
P 		476.8
(-2.9)
P 		3252.5
(3)
P 		2826
B 955.8
(-2.4)
P 		678.9
(-2.8)
P 		562.3
(-2.9)
P 		505.7
(-3)
P 		549
(-2.9)
P 		4701.1
(3)
P 		4195
C 885.9
(-1.8)
P 		557
(-2.5)
P 		512.2
(-2.6)
P 		544.1
(-2.5)
P 		317.6
(-3)
P 		3191.8
(3)
P 		2874
avr 1158.7
(-1.7) 		567
(-2.8) 		602.4
(-2.7) 		492
(-2.9) 		447.8
(-3) 		3715.1
(3) 		3267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2541
1 2 3 4 range
A 262.6
(-2.9)
P 		220.2
(-3)
P 		330.9
(-2.7)
P 		2414.2
(3)
P 		2194
B 259.5
(-2.8)
P 		197.3
(-3)
P 		251.5
(-2.8)
P 		2222.4
(3)
P 		2025
C 248.2
(-2.9)
P 		219.4
(-3)
P 		442.2
(-2.5)
P 		2738.5
(3)
P 		2519
avr 256.8
(-2.9) 		212.3
(-3) 		341.5
(-2.7) 		2458.4
(3) 		2246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1650
1 2 3 4 5 6 range
A 301.3
(-1.3)
P 		165.5
(-2.5)
P 		159.5
(-2.5)
P 		108.1
(-3)
P 		143.9
(-2.7)
P 		791.9
(3)
P 		684
B 332.6
(-2.3)
P 		226
(-2.7)
P 		136.5
(-3)
P 		133.9
(-3)
P 		223.1
(-2.7)
P 		1753
(3)
P 		1619
C 328.4
(-1.6)
P 		169.9
(-2.6)
P 		130.4
(-2.8)
P 		109.4
(-3)
P 		102.8
(-3)
P 		1068.5
(3)
P 		966
avr 320.8
(-1.9) 		187.1
(-2.6) 		142.1
(-2.9) 		117.1
(-3) 		156.6
(-2.8) 		1204.5
(3) 		1087
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1867
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.2 NCBI
Target Description Y87G2A.2 /REP_DB=WormBase Gene ID /WP=CE24684 /TR=Q9U1Q5 /GB=CAB60427.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060973
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019618 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13540326:13544386:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060973 7/11 Cross Hyb Matching Probes None
SNAP00000019587 7/11 Cross Hyb Matching Probes None
Y87G2A.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13542794-13544317(+) 82.02 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T27460 hypothetical protein Y87G2A.h - Caenorhabditis elegans 0.0
blast CAB60427 Hypothetical protein Y87G2A.2 [Caenorhabditis elegans] ref|NP_493374.1| Y87G2A.2 [Caenorhabditis elegans] 1.0E-109
blast CAE63547 Hypothetical protein CBG08033 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 7.8E-17
Pfam IPR003703 EMBL-EBI Acyl-CoA thioesterase 0.039
Sequence
Target Sequence 
>C. ELEGANS:182120_AT
tggctccgagtctggaaatccggcctgctgatttaaatatgttcttacatggaacaggtg
gtgttaatcagaagcaatatctttggattcgatacaaaattcctgttggtaagtggtgta
tctcgaaaactagagcagatagagaaaaattgtcaactgcgaacatgatctacgtctact
ccccgcagagttacaggcgtttgaagtttggcggtgcccaagagtgccgactcgcgcgtc
caacgcctataactctgtggagaggagagatagaaaaaagtattcaactaacaaaatgtt
cagaattttacgtagatcatttttataaatccgactacatgctacgccacgcaacaattg
tctacctatccgacctggaattagtaacaactggagccctgtgctttgacgataaaatgt
tcaaactacaaacttcaatggatcactccgcgtggattcatcaatatgagtttgatatca
acgattggatactgtatgagcaggaatgtgtggctaattccaatcatcgaagccttattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTCCGAGTCTGGAAATCCGGCC 86 541 482 Antisense
CAACTGCGAACATGATCTACGTCTA 446 183 635 Antisense
TACTCCCCGCAGAGTTACAGGCGTT 381 643 658 Antisense
AAGTTTGGCGGTGCCCAAGAGTGCC 16 3 685 Antisense
CGTCCAACGCCTATAACTCTGTGGA 626 245 718 Antisense
ATAAATCCGACTACATGCTACGCCA 201 25 806 Antisense
GCTACGCCACGCAACAATTGTCTAC 247 303 822 Antisense
TGTCTACCTATCCGACCTGGAATTA 324 557 840 Antisense
TAACAACTGGAGCCCTGTGCTTTGA 190 639 866 Antisense
AATGGATCACTCCGCGTGGATTCAT 689 161 918 Antisense
AATTCCAATCATCGAAGCCTTATTC 75 179 997 Antisense
Sequence Source Affymetrix Proprietary Database