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[182119_at]

Description C16C4.6 /REP_DB=WormBase Gene ID /WP=CE08202 /TR=O16550 /GB=AAB93652.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 25      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 19.7
(-3)
A 		60.2
(3)
A 		47.5
(1.1)
A 		20.5
(-2.9)
A 		41
B 8.8
(-3)
A 		22.6
(-0.9)
A 		35.2
(1)
A 		48.9
(3)
A 		40
C 33.4
(-0.5)
A 		33
(-0.5)
A 		7.5
(-3)
A 		68.5
(3)
A 		61
avr 20.6
(-3) 		38.6
(1.3) 		30.1
(-0.8) 		46
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 14
(-2.1)
A 		7.8
(-3)
A 		7.7
(-3)
A 		34.6
(0.8)
A 		50.3
(3)
A 		49.3
(2.9)
A 		43
B 14.3
(-1.4)
A 		6.6
(-3)
A 		31.7
(2.1)
A 		35.9
(3)
A 		32.5
(2.3)
A 		10.4
(-2.2)
A 		29
C 40.1
(1.6)
A 		19.8
(-1.7)
A 		39.8
(1.6)
A 		12.3
(-3)
A 		48.2
(3)
A 		28.9
(-0.2)
A 		36
avr 22.8
(-0.9) 		11.4
(-3) 		26.4
(-0.2) 		27.6
(0) 		43.7
(3) 		29.5
(0.4) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.2
(-0.5)
A 		13.1
(3)
A 		12.4
(2.6)
A 		3
(-3)
A 		10
B 2.8
(-3)
A 		5.6
(-0.8)
A 		8.1
(1.2)
A 		10.4
(3)
A 		8
C 11.1
(2.7)
A 		9.5
(1.6)
A 		2.6
(-3)
A 		11.6
(3)
A 		9
avr 7
(-3) 		9.4
(3) 		7.7
(-1.3) 		8.3
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		2.8
(-2.5)
A 		1.7
(-3)
A 		8.8
(0.2)
A 		15.2
(3)
A 		12
(1.6)
A 		14
B 5
(-1.5)
A 		2.2
(-3)
A 		7.7
(0)
A 		9.5
(1)
A 		13.2
(3)
A 		3.9
(-2.1)
A 		11
C 14.9
(2.7)
A 		6
(-1.4)
A 		10.1
(0.5)
A 		2.5
(-3)
A 		15.6
(3)
A 		9.7
(0.3)
A 		13
avr 7.5
(-0.9) 		3.7
(-3) 		6.5
(-1.5) 		6.9
(-1.3) 		14.7
(3) 		8.5
(-0.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4274
Sequence Type Exemplar sequence
Representative Public ID C16C4.6 NCBI
Target Description C16C4.6 /REP_DB=WormBase Gene ID /WP=CE08202 /TR=O16550 /GB=AAB93652.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061699 NCBI Caenorhabditis elegans C16C4.6 (C16C4.6) mRNA, complete cds. 11/11 None
C16C4.6 ENSEMBL cdna:known chromosome:CEL140:II:1862636:1863784:1 gene:C16C4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1862634-1863783(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.6
Entrez Gene 182660 Entrez gene
SwissProt O16550 EMBL-EBI
WormBase CE08202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93652 Hypothetical protein C16C4.6 [Caenorhabditis elegans] ref|NP_494100.1| C16C4.6 [Caenorhabditis elegans] 0.0
blast AAF35429 Hypothetical protein C52E2.1 [Caenorhabditis elegans] ref|NP_494097.1| C52E2.1 [Caenorhabditis elegans] 2.0E-77
blast AAK67221 Hypothetical protein C52E2.7 [Caenorhabditis elegans] ref|NP_494094.1| C52E2.7 [Caenorhabditis elegans] 7.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494100.1 1 299-321
C16C4.6 1 299-321
Sequence
Target Sequence 
>C. ELEGANS:182119_AT
gaagtggaccagttactcgtttctagaaaccacgaagcctgcgacaaactggcagggatt
aaatggagaataataataatgttaggcaaaaaccgtccgctatttgaccatatttaccgt
gacgccaagaatgttagcctttcggaccgaggtcttctcaacaaacacaccagggctatt
ttatcagaaaacttgaatagcatcgggttgaatttttcgtttgtgatggatctcaacgac
ttgttggcaataaatgttacaaaagcagaagtttatttctcatttaccctatccaatgtg
aatctatttcttagacattttataaatggatcaaatcctagactgagcgaaatttgtatt
gaattgaaaaggcgggaaaacctcgaggattcctggagttttgcttttcagttttgcttt
ttcgtaactctgcaacaattcataatgtttaatgtgtatatttatctccggaaacatatc
aaaaactgctcaaacaatttacggaaattcccttcttgcctccagctcccaatccctgaa
aaatgcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGGACCAGTTACTCGTTTCTA 87 335 508 Antisense
AAACCACGAAGCCTGCGACAAACTG 325 125 534 Antisense
AAAACCGTCCGCTATTTGACCATAT 383 131 596 Antisense
TTTGACCATATTTACCGTGACGCCA 341 667 610 Antisense
GCCAAGAATGTTAGCCTTTCGGACC 411 277 631 Antisense
TCGGACCGAGGTCTTCTCAACAAAC 696 605 649 Antisense
TCTCAACAAACACACCAGGGCTATT 405 611 663 Antisense
TTATTTCTCATTTACCCTATCCAAT 414 679 780 Antisense
GGAGTTTTGCTTTTCAGTTTTGCTT 557 517 902 Antisense
GCTTTTTCGTAACTCTGCAACAATT 330 305 923 Antisense
CTCCCAATCCCTGAAAAATGCCTGA 27 233 1033 Antisense
Sequence Source Affymetrix Proprietary Database