[Home] | [Total List]

[182117_at]

Description R05G6.4 /REP_DB=WormBase Gene ID /WP=CE07417 /TR=Q21755 /GB=AAB00625.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 85      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 501.5
(3)
P 		461.4
(-3)
P 		477.4
(-0.6)
P 		496.6
(2.3)
P 		40
B 408.9
(-3)
P 		455.4
(-0.1)
P 		480.7
(1.4)
P 		506.5
(3)
P 		98
C 463.9
(0.2)
P 		466.1
(0.4)
P 		420.7
(-3)
P 		501.3
(3)
P 		81
avr 458.1
(-3) 		461
(-2.6) 		459.6
(-2.8) 		501.5
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 482.9
(-0.9)
P 		391.4
(-3)
P 		656.4
(3)
P 		638.8
(2.6)
P 		622.4
(2.2)
P 		550.1
(0.6)
P 		265
B 453.1
(-3)
P 		552.6
(-1.4)
P 		725.3
(1.3)
P 		682.8
(0.6)
P 		760.7
(1.8)
P 		836.3
(3)
P 		383
C 399.9
(-3)
P 		570.7
(-0.8)
P 		417.1
(-2.8)
P 		658.4
(0.3)
P 		574.9
(-0.8)
P 		874.1
(3)
P 		474
avr 445.3
(-3) 		504.9
(-1.8) 		599.6
(0) 		660
(1.2) 		652.7
(1) 		753.5
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 182.6
(3)
P 		100.2
(-1.5)
P 		124.8
(-0.2)
P 		72.7
(-3)
P 		110
B 130.4
(3)
P 		112.5
(-1.8)
P 		111.4
(-2.1)
P 		107.9
(-3)
P 		23
C 153.6
(3)
P 		134
(1.3)
P 		146.6
(2.4)
P 		84.5
(-3)
P 		69
avr 155.5
(3) 		115.6
(-0.6) 		127.6
(0.5) 		88.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 89
(-3)
P 		139.2
(0)
P 		143
(0.3)
P 		162
(1.4)
P 		187.8
(3)
P 		133.9
(-0.3)
P 		99
B 157.7
(-3)
P 		184
(-2)
P 		176.1
(-2.3)
P 		180.9
(-2.1)
P 		309.1
(2.9)
P 		311.9
(3)
P 		154
C 148.2
(-1.6)
P 		174.1
(-0.8)
P 		106.2
(-3)
P 		132.4
(-2.2)
P 		186
(-0.4)
P 		292.6
(3)
P 		186
avr 131.6
(-3) 		165.8
(-1.2) 		141.8
(-2.5) 		158.4
(-1.6) 		227.6
(2) 		246.1
(3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9392
Sequence Type Exemplar sequence
Representative Public ID R05G6.4 NCBI
Target Description R05G6.4 /REP_DB=WormBase Gene ID /WP=CE07417 /TR=Q21755 /GB=AAB00625.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068813 NCBI Caenorhabditis elegans R05G6.4 (R05G6.4) mRNA, complete cds. 11/11 None
SNAP00000020438 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7513220:7514301:1 11/11 None
GENEFINDER00000020448 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7513220:7514301:1 11/11 None
R05G6.4 ENSEMBL cdna:known chromosome:CEL140:IV:7513215:7514331:1 gene:R05G6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7513225-7514307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05G6.4
Entrez Gene 177526 Entrez gene
SwissProt Q21755 EMBL-EBI
WormBase CE07417 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265035_AT expressed protein at
ATGENOME1:20172_AT expressed protein at
CANINE:1588169_AT similar to eNOS interacting protein cfa
CANINE_2:CFA.15447.1.A1_AT similar to eNOS interacting protein cfa
CANINE_2:CFAAFFX.6364.1.S1_AT similar to eNOS interacting protein cfa
CANINE_2:CFAAFFX.6364.1.S1_S_AT similar to eNOS interacting protein cfa
DROSOPHILA_2:1629607_AT dm
DROSGENOME1:145297_AT dm
HU35KSUBA:RC_AA262261_AT nitric oxide synthase interacting protein hs
HG-U133A:217950_AT nitric oxide synthase interacting protein hs
HG-U133_PLUS_2:217950_AT nitric oxide synthase interacting protein hs
HG-U133A_2:217950_AT nitric oxide synthase interacting protein hs
U133_X3P:G7705715_3P_AT nitric oxide synthase interacting protein hs
HG-U95C:65931_AT nitric oxide synthase interacting protein hs
MG-U74BV2:111822_AT nitric oxide synthase interacting protein mm
MG-U74BV2:111319_AT nitric oxide synthase interacting protein mm
MOE430A:1431428_A_AT nitric oxide synthase interacting protein mm
MOUSE430A_2:1431428_A_AT nitric oxide synthase interacting protein mm
MOUSE430_2:1431428_A_AT nitric oxide synthase interacting protein mm
MOE430A:1418965_AT nitric oxide synthase interacting protein mm
MOUSE430A_2:1418965_AT nitric oxide synthase interacting protein mm
MOUSE430_2:1418965_AT nitric oxide synthase interacting protein mm
MG-U74BV2:165375_AT Nitric oxide synthase interacting protein (Nosip), mRNA mm
MU19KSUBA:TC23933_AT Nitric oxide synthase interacting protein (Nosip), mRNA mm
MU19KSUBA:TC23971_AT Nitric oxide synthase interacting protein (Nosip), mRNA mm
MU19KSUBA:TC23971_G_AT Nitric oxide synthase interacting protein (Nosip), mRNA mm
RG-U34C:RC_AI104068_AT nitric oxide synthase interacting protein (predicted) rn
RAE230A:1371397_AT nitric oxide synthase interacting protein (predicted) rn
RAT230_2:1371397_AT nitric oxide synthase interacting protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_501214 R05G6.4 [Caenorhabditis elegans] gb|AAB00625.1| Hypothetical protein R05G6.4 [Caenorhabditis elegans] 1.0E-155
blast CAE61905 Hypothetical protein CBG05897 [Caenorhabditis briggsae] 1.0E-139
blast EAL31407 GA19415-PA [Drosophila pseudoobscura] 5.0E-55
Sequence
Target Sequence 
>C. ELEGANS:182117_AT
ccaagtaggaccggagctgtggccacaccaaggcctgaggttggaagtctgaaaagacaa
ggtggtgtcatgtctactgaaatagccgcaaaagtgaaagcacacggcgaggaaggagta
atgtcgaatatgaagggagacaaaagcacttcactaccaagtttctggatacccgaactc
aatcccaccgctgtcgccacgaaattggaaaaaccaagctccaaagttctttgtccggtt
tctggaaaacctataaaattgaaagagttattagaagtgaaattcactccaatgccagga
acagaaactgccgcacaccgaaaatttctgtgtccagtgaccagagatgaattgacaaac
accacaagatgcgcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGTAGGACCGGAGCTGTGGCCA 388 275 376 Antisense
GTGGCCACACCAAGGCCTGAGGTTG 12 493 394 Antisense
ACAAGGTGGTGTCATGTCTACTGAA 625 111 432 Antisense
AAAGCACTTCACTACCAAGTTTCTG 684 123 518 Antisense
TTCTGGATACCCGAACTCAATCCCA 352 695 538 Antisense
ACCGCTGTCGCCACGAAATTGGAAA 452 89 562 Antisense
TCCAAAGTTCTTTGTCCGGTTTCTG 281 557 595 Antisense
GAAATTCACTCCAATGCCAGGAACA 677 363 654 Antisense
AACTGCCGCACACCGAAAATTTCTG 540 141 681 Antisense
GAAAATTTCTGTGTCCAGTGACCAG 421 353 695 Antisense
GACAAACACCACAAGATGCGCATAT 118 367 729 Antisense
Sequence Source Affymetrix Proprietary Database