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[182116_at]

Description C54H2.4 /REP_DB=WormBase Gene ID /WP=CE06986 /TR=Q18862 /GB=AAB00589.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 59.7
(3)
A 		52.4
(1.9)
A 		31
(-1.4)
A 		20.9
(-3)
A 		39
B 33.6
(-3)
A 		41.3
(0.6)
A 		34.3
(-2.7)
A 		46.4
(3)
A 		13
C 35
(1.2)
A 		47.5
(3)
A 		5.5
(-3)
A 		40.7
(2)
A 		42
avr 42.8
(1.9) 		47.1
(3) 		23.6
(-3) 		36
(0.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 9.5
(-2.6)
A 		32.3
(-0.1)
A 		6.4
(-3)
A 		60.4
(3)
A 		6
(-3)
A 		15.8
(-1.9)
A 		54
B 11.3
(-2.1)
A 		30.9
(0.3)
A 		53.6
(3)
A 		3.6
(-3)
A 		3.8
(-3)
A 		8.6
(-2.4)
A 		50
C 5.8
(-3)
A 		51.3
(3)
A 		48.7
(2.7)
A 		29.8
(0.2)
A 		9.7
(-2.5)
A 		27.7
(-0.1)
A 		46
avr 8.9
(-2.5) 		38.2
(3) 		36.2
(2.6) 		31.3
(1.7) 		6.5
(-3) 		17.4
(-0.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.7
(3)
A 		11.4
(-0.3)
A 		8.1
(-1.4)
A 		3.1
(-3)
A 		19
B 10.7
(3)
A 		10.2
(1.9)
A 		8
(-3)
A 		9.9
(1.2)
A 		3
C 11.6
(1.9)
A 		13.7
(3)
A 		1.9
(-3)
A 		6.9
(-0.5)
A 		12
avr 14.7
(3) 		11.8
(1) 		6
(-3) 		6.6
(-2.6) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		11.5
(1.4)
A 		1.4
(-3)
A 		15.3
(3)
A 		1.8
(-2.8)
A 		3.9
(-1.9)
A 		14
B 3.9
(-1.6)
A 		10.3
(1.7)
A 		13
(3)
A 		1
(-3)
A 		1.5
(-2.8)
A 		3.2
(-1.9)
A 		12
C 2.1
(-3)
A 		15.7
(3)
A 		12.4
(1.5)
A 		6
(-1.3)
A 		3.1
(-2.6)
A 		9.3
(0.2)
A 		14
avr 2.6
(-2.7) 		12.5
(3) 		8.9
(0.9) 		7.4
(0.1) 		2.1
(-3) 		5.5
(-1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182116_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16281
Sequence Type Exemplar sequence
Representative Public ID C54H2.4 NCBI
Target Description C54H2.4 /REP_DB=WormBase Gene ID /WP=CE06986 /TR=Q18862 /GB=AAB00589.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076567
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031929 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5766440:5770641:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076567 8/11 Cross Hyb Matching Probes None
SNAP00000031926 7/11 Cross Hyb Matching Probes None
C54H2.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5766439-5769729(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508968 C54H2.4 [Caenorhabditis elegans] gb|AAB00589.2| Hypothetical protein C54H2.4 [Caenorhabditis elegans] 1.0E-103
blast CAE68797 Hypothetical protein CBG14747 [Caenorhabditis briggsae] 4.0E-93
Sequence
Target Sequence 
>C. ELEGANS:182116_AT
gaatgagggaagagccgtccggaagaatggatagaagaacaaaatatgaaaatggacaga
gaggtcagcaagagcaacagaaacaaagaagcaaaagtatgccacgaaaaatcgaaagca
atccgtttgacgggatcgagagtggttggtggagtaaaggagaagtgaaaagaaatcagg
ttggtttggggctgaaacaaatgcgtttttttattctcgtcgttctttctaaaacgctca
agctcatatatttcaaggagcgacgggaaattgcgaacggcggacaaatggtgagcggcg
gaaattggaaccaacgacctccgagccgacaaagagtttcgagaaagcttggtgctcttg
agaaagatgaaacagaagacatcccaacagccggatacagcggtcatatacaaggactcc
gtcagctcggagtaggaaaaccattcaatgttgcagcaaagcaagccaagaaagagtaca
ttgaacggagaagaacgtacagtggaagtcgagaagcactgaatggccgtgctcgaggaa
cccagttcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGAGGGAAGAGCCGTCCGGAAG 628 331 212 Antisense
GACGGGATCGAGAGTGGTTGGTGGA 358 373 340 Antisense
CAAATGCGTTTTTTTATTCTCGTCG 361 193 409 Antisense
CTCGTCGTTCTTTCTAAAACGCTCA 258 233 427 Antisense
AAACGCTCAAGCTCATATATTTCAA 231 127 443 Antisense
GCGACGGGAAATTGCGAACGGCGGA 617 289 471 Antisense
GAAATTGGAACCAACGACCTCCGAG 583 349 512 Antisense
GAAACAGAAGACATCCCAACAGCCG 281 355 580 Antisense
CCCAACAGCCGGATACAGCGGTCAT 313 257 594 Antisense
ATATACAAGGACTCCGTCAGCTCGG 572 11 617 Antisense
CGTGCTCGAGGAACCCAGTTCAGCG 195 245 739 Antisense
Sequence Source Affymetrix Proprietary Database