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[182115_s_at]

Description K08D9.6 /REP_DB=WormBase Gene ID /WP=CE19986 /TR=Q9TXN1 /GB=AAC69356.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 35      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 15.1
(-2.4)
A 		87.9
(3)
A 		7.2
(-3)
A 		44.8
(-0.2)
A 		81
B 9.1
(-2.7)
A 		34.3
(3)
A 		33.5
(2.8)
A 		8
(-3)
A 		26
C 27.8
(-1.2)
A 		17.7
(-2.1)
A 		6.3
(-3)
A 		78.5
(3)
A 		72
avr 17.3
(-2.7) 		46.6
(3) 		15.7
(-3) 		43.8
(2.5) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1307
1 2 3 4 5 6 range
A 16.5
(-3)
A 		39.6
(-2.9)
A 		283
(-1.6)
A 		1146.7
(3)
P 		739.2
(0.8)
P 		96.8
(-2.6)
A 		1130
B 11.1
(-3)
A 		18.2
(-3)
A 		256.5
(-1.6)
A 		1053
(3)
P 		682.6
(0.9)
P 		162.8
(-2.1)
A 		1042
C 22.6
(-3)
A 		52.3
(-2.9)
A 		180.1
(-2.3)
M 		1318.2
(3)
P 		682.9
(0.1)
P 		68.6
(-2.8)
A 		1296
avr 16.7
(-3) 		36.7
(-2.9) 		239.9
(-1.8) 		1172.6
(3) 		701.6
(0.6) 		109.4
(-2.5) 		1156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 5.5
(-1.7)
A 		19.1
(3)
A 		1.9
(-3)
A 		6.6
(-1.4)
A 		17
B 2.9
(-1.9)
A 		8.5
(3)
A 		7.8
(2.4)
A 		1.7
(-3)
A 		7
C 9.2
(0.8)
A 		5.1
(-1.4)
A 		2.2
(-3)
A 		13.2
(3)
A 		11
avr 5.9
(-1.3) 		10.9
(3) 		4
(-3) 		7.2
(-0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 288
1 2 3 4 5 6 range
A 3
(-3)
A 		14.1
(-2.8)
A 		61.6
(-1.8)
A 		290.8
(3)
P 		223.1
(1.6)
P 		23.6
(-2.6)
A 		288
B 3.9
(-3)
A 		6
(-3)
A 		62.3
(-1.7)
A 		278.9
(3)
P 		277.3
(3)
P 		60.7
(-1.8)
A 		275
C 8.4
(-3)
A 		16
(-2.8)
A 		45.8
(-2.1)
M 		265.1
(3)
P 		221
(2)
P 		23
(-2.7)
A 		257
avr 5.1
(-3) 		12
(-2.8) 		56.6
(-1.9) 		278.3
(3) 		240.5
(2.2) 		35.8
(-2.3) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182115_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15662
Sequence Type Exemplar sequence
Representative Public ID K08D9.6 NCBI
Target Description K08D9.6 /REP_DB=WormBase Gene ID /WP=CE19986 /TR=Q9TXN1 /GB=AAC69356.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071484 NCBI Caenorhabditis elegans K08D9.6 (K08D9.6) mRNA, complete cds. 11/11 None
SNAP00000017187 ENSEMBL cdna:SNAP chromosome:CEL140:V:3228561:3234347:-1 10/11 None
GENEFINDER00000017193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3231225:3236557:-1 11/11 None
K08D9.6 ENSEMBL cdna:known chromosome:CEL140:V:3231225:3234777:-1 gene:K08D9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3231224-3234714(-) 98.75 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D9.6
Entrez Gene 178760 Entrez gene
SwissProt Q9TXN1 EMBL-EBI
WormBase CE32199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69356 Hypothetical protein K08D9.6 [Caenorhabditis elegans] ref|NP_503885.2| K08D9.6 [Caenorhabditis elegans] 0.0
blast AAB69878 Hypothetical protein C13A2.6 [Caenorhabditis elegans] ref|NP_504847.1| C13A2.6 [Caenorhabditis elegans] 0.0
blast AAY43981 Hypothetical protein ZK381.8 [Caenorhabditis elegans] ref|NP_001023614.1| ZK381.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.1E-18
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503885.2 1 31-53
K08D9.6 1 31-53
GENEFINDER00000017193 3 13-30,45-67,87-106
Sequence
Target Sequence 
>C. ELEGANS:182115_S_AT
caaagagatcgtttctaccctcgagtcttctgacacagtgaagcgtggcaaagtagtggt
gaagccggaacgatacaattccacgtggattcattatagttggcacgatgcaaaccgccg
cgaaatagtctccccaaacttggtacatgtgcaacggccacttgaagaggactcgaacaa
cgagatgaccgacgtctggcaaatggaatttggtgttttaaacgagactatacggcaatc
ggatattaaagcaattgacaaagatattgccagaatgaagaagatcccaaagataaagaa
aatcgcgtcgaaattgccattgacagatttctacttgcctatagtgtttcagtgttatta
tgctgcgttttacggtgcagcattcgacggtcgggcgggtggattcgggtgcccaaatgc
cgataactgtagactgccacaaagggaagagcataagtgtgtgcattcagatgctgagta
ttattctggtccacatatggttccgtttacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGAGATCGTTTCTACCCTCGAG 271 193 1206 Antisense
CCCTCGAGTCTTCTGACACAGTGAA 182 259 1223 Antisense
TAGTTGGCACGATGCAAACCGCCGC 242 651 1302 Antisense
GCAAACCGCCGCGAAATAGTCTCCC 264 317 1315 Antisense
ATAGTCTCCCCAAACTTGGTACATG 263 19 1330 Antisense
TGGTACATGTGCAACGGCCACTTGA 674 547 1346 Antisense
ACAACGAGATGACCGACGTCTGGCA 452 111 1382 Antisense
TTTACGGTGCAGCATTCGACGGTCG 449 661 1574 Antisense
GGTGCCCAAATGCCGATAACTGTAG 473 501 1613 Antisense
GATGCTGAGTATTATTCTGGTCCAC 112 415 1675 Antisense
GGTCCACATATGGTTCCGTTTACCT 130 503 1693 Antisense
Sequence Source Affymetrix Proprietary Database