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[182114_at]

Description T27A3.6 /REP_DB=WormBase Gene ID /WP=CE14227 /TR=P91500 /GB=AAB42299.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 62      6grp_total > 63      4grp_total > 54      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 402.9
(3)
P 		333.8
(1)
P 		271.5
(-0.8)
P 		198
(-3)
P 		205
B 465
(3)
P 		347
(0.4)
P 		278.8
(-1.1)
P 		190.7
(-3)
P 		274
C 541.8
(3)
P 		369
(-0.5)
P 		320.7
(-1.5)
P 		243.7
(-3)
P 		298
avr 469.9
(3) 		349.9
(0.2) 		290.3
(-1.2) 		210.8
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 437.9
(-1.5)
P 		421
(-1.7)
P 		756.7
(3)
P 		540.7
(-0)
P 		373.1
(-2.4)
P 		326.9
(-3)
P 		430
B 395.7
(-3)
P 		401.4
(-2.7)
P 		430.8
(-1.2)
P 		510.5
(3)
P 		463.5
(0.5)
P 		485.7
(1.7)
P 		115
C 335.2
(-3)
P 		417.9
(-0.9)
P 		566
(3)
P 		556.4
(2.8)
P 		361.8
(-2.3)
P 		452.5
(0)
P 		231
avr 389.6
(-3) 		413.4
(-2.3) 		584.5
(3) 		535.9
(1.5) 		399.5
(-2.7) 		421.7
(-2) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 146.7
(3)
P 		72.5
(-0.8)
P 		71
(-0.9)
P 		29
(-3)
P 		118
B 148.3
(3)
P 		85.7
(-0.5)
P 		64.6
(-1.7)
P 		40.6
(-3)
P 		108
C 179.4
(3)
P 		106.1
(-0.2)
P 		111.8
(0.1)
P 		41.1
(-3)
P 		138
avr 158.1
(3) 		88.1
(-0.5) 		82.5
(-0.7) 		36.9
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 80.7
(-2.9)
P 		149.7
(1.9)
P 		164.8
(3)
P 		137.1
(1)
P 		112.6
(-0.7)
P 		79.6
(-3)
P 		85
B 137.7
(-0.6)
P 		133.6
(-0.9)
P 		104.6
(-3)
P 		135.2
(-0.8)
P 		188.3
(3)
P 		181.1
(2.5)
P 		84
C 124.2
(-1.1)
P 		127.5
(-0.6)
P 		144.1
(1.9)
P 		111.9
(-3)
P 		117.1
(-2.2)
P 		151.5
(3)
P 		40
avr 114.2
(-3) 		136.9
(2.4) 		137.8
(2.6) 		128.1
(0.3) 		139.3
(3) 		137.4
(2.5) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.611
Sequence Type Exemplar sequence
Representative Public ID T27A3.6 NCBI
Target Description T27A3.6 /REP_DB=WormBase Gene ID /WP=CE14227 /TR=P91500 /GB=AAB42299.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059362 NCBI Caenorhabditis elegans T27A3.6 (T27A3.6) mRNA, complete cds. 11/11 None
SNAP00000022769 ENSEMBL cdna:SNAP chromosome:CEL140:I:6114120:6115850:-1 11/11 None
GENEFINDER00000022780 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6114120:6115850:-1 11/11 None
T27A3.6 ENSEMBL cdna:known chromosome:CEL140:I:6114120:6115850:-1 gene:T27A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6114119-6115850(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A3.6
Entrez Gene 188966 Entrez gene
SwissProt P91500 EMBL-EBI
WormBase CE14227 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20596_S_AT molybdopterin biosynthesis MoaE family protein at
ATGENOME1:20595_I_AT molybdopterin biosynthesis MoaE family protein at
ATH1-121501:260572_AT molybdopterin biosynthesis MoaE family protein at
CANINE:1605690_AT similar to Molybdenum cofactor synthesis protein 2 large subunit (Molybdopterin synthase large subunit) (MPT synthase large subunit) (MOCS2B) (MOCO1-B) cfa
CANINE:1595982_S_AT similar to Molybdenum cofactor synthesis protein 2 large subunit (Molybdopterin synthase large subunit) (MPT synthase large subunit) (MOCS2B) (MOCO1-B) cfa
CANINE_2:CFA.14463.1.S1_S_AT similar to Molybdenum cofactor synthesis protein 2 large subunit (Molybdopterin synthase large subunit) (MPT synthase large subunit) (MOCS2B) (MOCO1-B) cfa
DROSOPHILA_2:1629924_AT dm
DROSGENOME1:151881_AT dm
CHICKEN:GGA.9572.2.S1_S_AT similar to Molybdenum cofactor synthesis protein 2 large subunit (Molybdopterin synthase large subunit) (MPT synthase large subunit) (MOCS2B) (MOCO1-B) gga
HU35KSUBC:RC_AA252365_AT molybdenum cofactor synthesis 2 hs
HG-U133A:218212_S_AT molybdenum cofactor synthesis 2 hs
HG-U133_PLUS_2:218212_S_AT molybdenum cofactor synthesis 2 hs
HG-FOCUS:218212_S_AT molybdenum cofactor synthesis 2 hs
HG-U133A_2:218212_S_AT molybdenum cofactor synthesis 2 hs
U133_X3P:G4758731_3P_S_AT molybdenum cofactor synthesis 2 hs
HG-U95B:46248_AT molybdenum cofactor synthesis 2 hs
U133_X3P:HS.163645.0.A1_3P_AT Molybdenum cofactor synthesis 2 hs
HG-U133_PLUS_2:236208_AT Molybdenum cofactor synthesis 2 hs
HG-U133B:236208_AT Molybdenum cofactor synthesis 2 hs
HG-U95E:84081_AT Molybdenum cofactor synthesis 2 hs
MG-U74BV2:116260_AT molybdenum cofactor synthesis 2 mm
MG-U74AV2:160637_AT molybdenum cofactor synthesis 2 mm
MOE430A:1424309_A_AT molybdenum cofactor synthesis 2 mm
MOUSE430A_2:1424309_A_AT molybdenum cofactor synthesis 2 mm
MOUSE430_2:1424309_A_AT molybdenum cofactor synthesis 2 mm
MOE430A:1424310_AT molybdenum cofactor synthesis 2 mm
MOUSE430A_2:1424310_AT molybdenum cofactor synthesis 2 mm
MOUSE430_2:1424310_AT molybdenum cofactor synthesis 2 mm
MU19KSUBC:TC39684_AT Molybdenum cofactor synthesis 2, mRNA (cDNA clone MGC:35997 IMAGE:4983231) mm
MU19KSUBC:TC39684_G_AT Molybdenum cofactor synthesis 2, mRNA (cDNA clone MGC:35997 IMAGE:4983231) mm
RG-U34B:RC_AI010683_AT molybdopterin synthase rn
RG-U34B:RC_AA851017_AT molybdopterin synthase rn
RG-U34B:RC_AA851017_G_AT molybdopterin synthase rn
RG-U34B:RC_AI009592_AT molybdopterin synthase rn
RAE230A:1372177_AT molybdopterin synthase rn
RAT230_2:1372177_AT molybdopterin synthase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6777 Mo-molybdopterin cofactor biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4849 uridine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42299 Hypothetical protein T27A3.6 [Caenorhabditis elegans] ref|NP_491763.1| T27A3.6 [Caenorhabditis elegans] 0.0
blast CAE72950 Hypothetical protein CBG20281 [Caenorhabditis briggsae] 1.0E-156
blast CAE72950 Hypothetical protein CBG20281 [Caenorhabditis briggsae] 1.0E-142
blast AAF56405 CG10238-PA [Drosophila melanogaster] ref|NP_651340.1| CG10238-PA [Drosophila melanogaster] gb|AAK77252.1| GH02855p [Drosophila melanogaster] 5.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR003448 EMBL-EBI Molybdopterin biosynthesis MoaE 2.1E-62
Pfam IPR003448 EMBL-EBI Molybdopterin biosynthesis MoaE 2.1E-62
Sequence
Target Sequence 
>C. ELEGANS:182114_AT
ttatgtgcctgcagacacacctggatattttgtcaacgtcgcttttcctgcttatgttag
acatttagaaagggcgaggcaaagaagtcgcacagattcccgattaacattcatcgatgt
ctcggagtccaaatttgatgacaagaacaagtcgatagttaactttagacaacaaatcct
tgatgatcatataaaactgactgatgaagtgatagatgtgaaggttgtggatcagcttgt
tagtcacccttcctgtggagcaatatccacctttaacggtgtgacacgtgataaccatgg
aggtcgtgacgtcagcaacctttcctacgattgtcacgacttgatggcatacaagaagct
acgtggaatctgtgcagaaattcgagcggaatatccggatgttaagaaaatcgcgatttt
tcatcgtctaggaaaagtagacatcggagagtcatctgtgataatttccacgtcttcacc
acatcggaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATGTGCCTGCAGACACACCTGGA 196 679 414 Antisense
TATTTTGTCAACGTCGCTTTTCCTG 297 663 439 Antisense
TCGCTTTTCCTGCTTATGTTAGACA 687 599 452 Antisense
GAAGTCGCACAGATTCCCGATTAAC 618 335 497 Antisense
ATTCATCGATGTCTCGGAGTCCAAA 33 13 522 Antisense
GTGGATCAGCTTGTTAGTCACCCTT 373 489 640 Antisense
TCACCCTTCCTGTGGAGCAATATCC 459 625 657 Antisense
TGGAGGTCGTGACGTCAGCAACCTT 613 549 711 Antisense
AACCTTTCCTACGATTGTCACGACT 168 147 730 Antisense
GAAGCTACGTGGAATCTGTGCAGAA 304 343 768 Antisense
TCCACGTCTTCACCACATCGGAAGA 389 589 880 Antisense
Sequence Source Affymetrix Proprietary Database