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[182113_at]

Description W07E6.5 /REP_DB=WormBase Gene ID /WP=CE17297 /TR=Q9TYV4 /GB=AAC78180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 15.2
(-3)
A 		19.5
(-1.3)
A 		30.3
(3)
A 		25.1
(0.9)
A 		15
B 19.9
(-3)
A 		22.7
(-2.4)
A 		50.1
(3)
A 		33.6
(-0.3)
A 		30
C 45.5
(3)
A 		22.4
(-3)
A 		30.1
(-1)
A 		43.3
(2.4)
A 		23
avr 26.9
(-0.9) 		21.5
(-3) 		36.8
(3) 		34
(1.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 34.6
(-2.5)
A 		19.7
(-3)
A 		37.5
(-2.4)
A 		172.2
(2.1)
A 		199.9
(3)
A 		194.4
(2.8)
A 		180
B 17.5
(-3)
A 		31.7
(-2.7)
A 		101.2
(-1)
A 		115
(-0.6)
A 		140.8
(0)
A 		264.1
(3)
A 		247
C 17.2
(-3)
A 		47.3
(-2.2)
A 		116.3
(-0.3)
A 		99.1
(-0.7)
A 		95.2
(-0.9)
A 		235
(3)
A 		218
avr 23.1
(-3) 		32.9
(-2.7) 		85
(-1.2) 		128.8
(0) 		145.3
(0.5) 		231.2
(3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.5
(-0.4)
A 		4.2
(-2.3)
A 		7.9
(3)
A 		3.7
(-3)
A 		4
B 6.3
(-2.3)
A 		5.6
(-3)
A 		11.6
(3)
A 		7.2
(-1.4)
A 		6
C 15
(3)
A 		6.4
(-3)
A 		10.5
(-0.1)
A 		7.3
(-2.4)
A 		9
avr 8.9
(1.6) 		5.4
(-3) 		10
(3) 		6.1
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 6.4
(-3)
A 		7
(-2.9)
A 		8.2
(-2.8)
A 		43.7
(1.2)
A 		60.3
(3)
A 		47.3
(1.6)
A 		54
B 6.1
(-3)
A 		10.5
(-2.7)
A 		24.6
(-1.8)
A 		30.5
(-1.4)
A 		57.2
(0.3)
A 		98.5
(3)
A 		92
C 6.4
(-3)
A 		14.4
(-2.3)
A 		29.6
(-1.1)
A 		19.9
(-1.9)
A 		30.8
(-1)
A 		78.7
(3)
A 		72
avr 6.3
(-3) 		10.6
(-2.6) 		20.8
(-1.7) 		31.4
(-0.8) 		49.4
(0.8) 		74.8
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5238
Sequence Type Exemplar sequence
Representative Public ID W07E6.5 NCBI
Target Description W07E6.5 /REP_DB=WormBase Gene ID /WP=CE17297 /TR=Q9TYV4 /GB=AAC78180.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061342 NCBI Caenorhabditis elegans W07E6.5 (W07E6.5) mRNA, complete cds. 11/11 None
W07E6.5 ENSEMBL cdna:known chromosome:CEL140:II:476554:477794:1 gene:W07E6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002744 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002753 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:476553-477794(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07E6.5
Entrez Gene 189277 Entrez gene
SwissProt Q9TYV4 EMBL-EBI
WormBase CE17297 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78180 Hypothetical protein W07E6.5 [Caenorhabditis elegans] ref|NP_493743.1| W07E6.5 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493743.1 6 21-38,68-90,97-116,131-150,163-185,189-211
W07E6.5 6 21-38,68-90,97-116,131-150,163-185,189-211
Sequence
Target Sequence 
>C. ELEGANS:182113_AT
gaccatagtggcggtcttcctgttatcttcgctataccgcctagttgctgctcaatttgt
gaaaaagttttcgctggaactcgcattcattccgtggatgttaattttattagcttccgt
cacgctgataaaaggagaaccgaaatgggatgattaccagaaaagggtgttcaatttctg
ctcactctcaatattctcttttgttgcgtcgacatcgtttttctcgctgaaatgtcattc
tccaaaacattattcaaacagtgaattatgggttcttctcattttgtggattgtttgcgc
gttatttctatgggcaccttcttttctcggaatatatgtacacgttagtacaatcgtgtc
tccccaactcgcgttttcgttacaattctccgttgtccgattcggtttcttaaaaaactc
gctcaataaagtaatattgatttctaacgtaccatcaaatcccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCATAGTGGCGGTCTTCCTGTTA 472 383 234 Antisense
CGCCTAGTTGCTGCTCAATTTGTGA 644 257 271 Antisense
AACTCGCATTCATTCCGTGGATGTT 616 141 311 Antisense
TTATTAGCTTCCGTCACGCTGATAA 535 679 340 Antisense
AGGGTGTTCAATTTCTGCTCACTCT 25 59 397 Antisense
TGCTCACTCTCAATATTCTCTTTTG 346 581 412 Antisense
TCGACATCGTTTTTCTCGCTGAAAT 541 601 442 Antisense
TATTTCTATGGGCACCTTCTTTTCT 395 661 536 Antisense
CTCGCGTTTTCGTTACAATTCTCCG 149 231 601 Antisense
CAATTCTCCGTTGTCCGATTCGGTT 145 173 616 Antisense
TTCTAACGTACCATCAAATCCCACA 85 689 675 Antisense
Sequence Source Affymetrix Proprietary Database