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[182112_at]

Description F41B5.6 /REP_DB=WormBase Gene ID /WP=CE10226 /TR=O16669 /GB=AAG24103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20
(3)
A 		6.5
(-1.5)
A 		1.9
(-3)
A 		7.4
(-1.2)
A 		18
B 9
(0.8)
A 		3.1
(-3)
A 		5
(-1.8)
A 		12.4
(3)
A 		9
C 30.9
(3)
A 		17.7
(0.2)
A 		4
(-2.7)
A 		2.6
(-3)
A 		28
avr 20
(3) 		9.1
(-1) 		3.6
(-3) 		7.5
(-1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 2.4
(-2.8)
A 		1.7
(-3)
A 		3.1
(-2.7)
A 		26.4
(3)
A 		3.4
(-2.6)
A 		5.1
(-2.2)
A 		25
B 25.7
(-0.1)
A 		16.9
(-2)
A 		21.8
(-0.9)
A 		23.9
(-0.5)
A 		12.6
(-3)
A 		39.5
(3)
A 		27
C 11.9
(-1.3)
A 		10.7
(-1.7)
A 		6.4
(-3)
A 		12.2
(-1.2)
A 		25.8
(3)
A 		21.8
(1.8)
A 		19
avr 13.3
(-1.3) 		9.8
(-3) 		10.4
(-2.7) 		20.8
(2.4) 		13.9
(-1) 		22.1
(3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.3
(3)
A 		1.4
(-2.2)
A 		0.5
(-3)
A 		1.1
(-2.5)
A 		7
B 2.9
(3)
A 		0.8
(-3)
A 		1.2
(-1.9)
A 		2.6
(2.1)
A 		2
C 10.2
(3)
A 		5.1
(-0.1)
A 		1.4
(-2.4)
A 		0.4
(-3)
A 		10
avr 6.8
(3) 		2.4
(-1.6) 		1
(-3) 		1.4
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-2.8)
A 		0.7
(-2.7)
A 		6.7
(3)
A 		1
(-2.4)
A 		1.3
(-2.1)
A 		6
B 9
(-0.6)
A 		5.6
(-2.7)
A 		5.3
(-2.9)
A 		6.3
(-2.3)
A 		5.1
(-3)
A 		14.7
(3)
A 		10
C 4.4
(-0.5)
A 		3.3
(-1.5)
A 		1.6
(-3)
A 		2.5
(-2.2)
A 		8.4
(3)
A 		7.3
(2)
A 		7
avr 4.6
(-0.6) 		3.2
(-2.2) 		2.5
(-3) 		5.2
(0.1) 		4.8
(-0.4) 		7.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15362
Sequence Type Exemplar sequence
Representative Public ID F41B5.6 NCBI
Target Description F41B5.6 /REP_DB=WormBase Gene ID /WP=CE10226 /TR=O16669 /GB=AAG24103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071213 NCBI Caenorhabditis elegans F41B5.6 (F41B5.6) mRNA, complete cds. 11/11 None
SNAP00000035997 ENSEMBL cdna:SNAP chromosome:CEL140:V:2239750:2241340:1 9/11 None
GENEFINDER00000036009 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2239068:2241340:1 11/11 None
F41B5.6 ENSEMBL cdna:known chromosome:CEL140:V:2239068:2241340:1 gene:F41B5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2239067-2241340(+) 65.44 100.0
Public Domain and Genome References
Gene Title
Ensembl F41B5.6
Entrez Gene 178705 Entrez gene
SwissProt O16669 EMBL-EBI
WormBase CE10226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24103 Hypothetical protein F41B5.6 [Caenorhabditis elegans] ref|NP_503614.1| F41B5.6 [Caenorhabditis elegans] 0.0
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 0.0
blast CAA99870 Hypothetical protein K01D12.2 [Caenorhabditis elegans] ref|NP_506100.1| K01D12.2 [Caenorhabditis elegans] 1.0E-169
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 1.0E-166
blast CAA99870 Hypothetical protein K01D12.2 [Caenorhabditis elegans] ref|NP_506100.1| K01D12.2 [Caenorhabditis elegans] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182112_AT
gtcgaatctcgacacagaaacttttgaagttcctccaattgctgaaataccaaaacaaaa
ctgcgatcaatccgaagtaagcaatacacaaactttggaacaaggtttctcattgtcagt
tctacccgagatgattccaatcggactacaattgcaaattgcaatggagaaatacggaca
aagcagaatcaagttttcttctgaaaaacaccacactgccacacatttaacaccagctga
agaatcacacaactttggatttagtctccacgtggaccacaagataacaactcaatggca
agatgataagcatccctgggatccaggaacacaacaaagagatatacaatcacctcaaac
acaaaggatgcccacaacactgcttgatcaagcaacgatattgtcatttctgagtatgct
gtatgtttttagcattcttcctggactttcaacttggaatggactcccaatctggcttca
atggaatattggaaactctaagaattatcggatgccaatcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAATCTCGACACAGAAACTTTT 282 473 1200 Antisense
AAACTGCGATCAATCCGAAGTAAGC 565 125 1257 Antisense
TGGAACAAGGTTTCTCATTGTCAGT 633 545 1295 Antisense
GAGATGATTCCAATCGGACTACAAT 117 395 1327 Antisense
CACACTGCCACACATTTAACACCAG 392 195 1411 Antisense
GATTTAGTCTCCACGTGGACCACAA 475 427 1457 Antisense
GATATACAATCACCTCAAACACAAA 434 425 1540 Antisense
GCTGTATGTTTTTAGCATTCTTCCT 356 295 1617 Antisense
GCATTCTTCCTGGACTTTCAACTTG 404 307 1631 Antisense
TGGAATGGACTCCCAATCTGGCTTC 243 547 1654 Antisense
AAGAATTATCGGATGCCAATCGGAC 50 153 1699 Antisense
Sequence Source Affymetrix Proprietary Database