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[182111_at]

Description D2024.4 /REP_DB=WormBase Gene ID /WP=CE04293 /TR=Q18972 /GB=AAA82287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 5.3
(-3)
A 		204.2
(3)
P 		142.7
(1.1)
P 		48.5
(-1.7)
A 		199
B 1.9
(-3)
A 		203.6
(3)
P 		178.1
(2.2)
P 		20.2
(-2.5)
A 		202
C 5.2
(-3)
A 		237.3
(3)
P 		227.2
(2.7)
P 		6.2
(-3)
A 		232
avr 4.1
(-3) 		215
(3) 		182.7
(2.1) 		25
(-2.4) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 17.3
(-3)
A 		170.9
(3)
P 		130.5
(1.4)
P 		155.9
(2.4)
P 		110.5
(0.6)
P 		50.1
(-1.7)
P 		154
B 1.9
(-3)
A 		208.6
(3)
P 		158
(1.5)
P 		144.6
(1.1)
P 		176.7
(2.1)
P 		62.7
(-1.2)
P 		207
C 7.1
(-3)
A 		221
(2.8)
P 		115.7
(-0.1)
P 		230.2
(3)
P 		138.2
(0.5)
P 		51.3
(-1.8)
P 		223
avr 8.8
(-3) 		200.2
(3) 		134.7
(0.9) 		176.9
(2.3) 		141.8
(1.2) 		54.7
(-1.6) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 1.9
(-3)
A 		44.3
(3)
P 		37.3
(2)
P 		7.1
(-2.3)
A 		42
B 0.6
(-3)
A 		50.3
(3)
P 		41.3
(1.9)
P 		4.3
(-2.6)
A 		50
C 1.7
(-2.9)
A 		68.2
(2.2)
P 		79.2
(3)
P 		1
(-3)
A 		78
avr 1.4
(-3) 		54.3
(3) 		52.6
(2.8) 		4.1
(-2.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 3.2
(-3)
A 		60.8
(3)
P 		28.4
(-0.4)
P 		39.6
(0.8)
P 		33.3
(0.1)
P 		12.2
(-2.1)
P 		58
B 0.7
(-3)
A 		69.4
(2.8)
P 		38.4
(0.2)
P 		38.3
(0.2)
P 		71.8
(3)
P 		23.4
(-1.1)
P 		71
C 2.6
(-3)
A 		67.4
(3)
P 		29.4
(-0.5)
P 		46.3
(1)
P 		44.7
(0.9)
P 		17.2
(-1.6)
P 		65
avr 2.2
(-3) 		65.9
(3) 		32.1
(-0.2) 		41.4
(0.7) 		49.9
(1.5) 		17.6
(-1.5) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9301
Sequence Type Exemplar sequence
Representative Public ID D2024.4 NCBI
Target Description D2024.4 /REP_DB=WormBase Gene ID /WP=CE04293 /TR=Q18972 /GB=AAA82287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068745 NCBI Caenorhabditis elegans D2024.4 (D2024.4) mRNA, complete cds. 11/11 None
D2024.4 ENSEMBL cdna:known chromosome:CEL140:IV:7231443:7233111:1 gene:D2024.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033325 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033334 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7231448-7233099(+) 77.51 97.97
Public Domain and Genome References
Gene Title
Ensembl D2024.4
Entrez Gene 183949 Entrez gene
SwissProt Q18972 EMBL-EBI
WormBase CE04293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501146 D2024.4 [Caenorhabditis elegans] gb|AAA82287.1| Hypothetical protein D2024.4 [Caenorhabditis elegans] 1.0E-145
blast CAE61840 Hypothetical protein CBG05813 [Caenorhabditis briggsae] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:182111_AT
gagagatgctcggtggtaaaactacatgtaaattctgctctctgtgcgaaaacgttaagg
aaaacgtaaaagaaaatgagagcaaattgaacaagcttaaaaaatttttgagcaacgagg
ggaaggaggagtgttccacaactgataatattcatagatatacttttaagatgtgcactc
cgactcaagacgatattaacaaagaagaatctgacacgaaggataaaatcgaggagtact
ggcagtacctcaaacaggttaaaatggatgttcgtcctggaatcatgactacagtaatcc
atgtaatggatcgtaacccaatgaagtctggaagagctgaacaatgtcaaaagatgtgcc
aagtttatggtgactccactttcttttcatcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGATGCTCGGTGGTAAAACTAC 198 395 308 Antisense
AACTACATGTAAATTCTGCTCTCTG 221 141 327 Antisense
AATTCTGCTCTCTGTGCGAAAACGT 570 175 338 Antisense
GAGGAGTGTTCCACAACTGATAATA 636 403 433 Antisense
ACTTTTAAGATGTGCACTCCGACTC 312 103 469 Antisense
GTGCACTCCGACTCAAGACGATATT 323 481 480 Antisense
GTACTGGCAGTACCTCAAACAGGTT 495 457 543 Antisense
GGATGTTCGTCCTGGAATCATGACT 121 513 573 Antisense
GGATCGTAACCCAATGAAGTCTGGA 344 511 615 Antisense
GTGCCAAGTTTATGGTGACTCCACT 230 477 663 Antisense
GACTCCACTTTCTTTTCATCGAAAA 36 375 679 Antisense
Sequence Source Affymetrix Proprietary Database