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[182110_at]

Description F54E7.6 /REP_DB=WormBase Gene ID /WP=CE01317 /TR=Q20784 /GB=AAK20075.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 10.1
(-3)
A 		85.5
(1.8)
A 		105.2
(3)
P 		74.2
(1)
A 		95
B 9.5
(-3)
A 		52.1
(-0.7)
A 		121.5
(3)
P 		12.1
(-2.9)
A 		112
C 12.9
(-3)
A 		95.5
(1.8)
A 		117.1
(3)
P 		19.8
(-2.6)
A 		104
avr 10.8
(-3) 		77.7
(0.9) 		114.6
(3) 		35.4
(-1.6) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 90.5
(2.7)
A 		95.1
(3)
P 		68.6
(1.1)
A 		48.7
(-0.4)
A 		64.1
(0.7)
A 		12.6
(-3)
A 		83
B 91.5
(2)
P 		79.4
(1.2)
P 		83.7
(1.5)
P 		108.6
(3)
A 		8.7
(-3)
A 		29.7
(-1.7)
A 		100
C 47.9
(-0.5)
A 		80.2
(3)
A 		64.5
(1.3)
A 		40.8
(-1.2)
A 		48.3
(-0.4)
A 		24.5
(-3)
A 		56
avr 76.6
(2.2) 		84.9
(3) 		72.3
(1.8) 		66
(1.2) 		40.4
(-1.3) 		22.3
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 3.7
(-3)
A 		18.6
(0.8)
A 		27.5
(3)
P 		10.9
(-1.2)
A 		24
B 3
(-2.9)
A 		12.9
(-0.6)
A 		28.1
(3)
P 		2.6
(-3)
A 		26
C 4.3
(-2.8)
A 		27.5
(0.9)
A 		40.8
(3)
P 		3.3
(-3)
A 		38
avr 3.7
(-3) 		19.7
(0.4) 		32.1
(3) 		5.6
(-2.6) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16.7
(-0.3)
A 		33.8
(3)
P 		14.9
(-0.7)
A 		12.3
(-1.2)
A 		19.3
(0.2)
A 		3.1
(-3)
A 		31
B 31.9
(3)
P 		26.4
(1.8)
P 		20.3
(0.5)
P 		28.8
(2.3)
A 		3.6
(-3)
A 		11.1
(-1.4)
A 		28
C 17.8
(0.5)
A 		24.5
(3)
A 		16.4
(0)
A 		8.2
(-3)
A 		15.6
(-0.3)
A 		8.2
(-3)
A 		16
avr 22.1
(1.2) 		28.2
(3) 		17.2
(-0.2) 		16.4
(-0.4) 		12.8
(-1.5) 		7.5
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7130
Sequence Type Exemplar sequence
Representative Public ID F54E7.6 NCBI
Target Description F54E7.6 /REP_DB=WormBase Gene ID /WP=CE01317 /TR=Q20784 /GB=AAK20075.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065815 NCBI Caenorhabditis elegans F54E7.6 (F54E7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000020791 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5655172:5661035:-1 11/11 None
SNAP00000020781 ENSEMBL cdna:SNAP chromosome:CEL140:III:5659839:5661035:-1 11/11 None
F54E7.6 ENSEMBL cdna:known chromosome:CEL140:III:5659839:5661035:-1 gene:F54E7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5659837-5661034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54E7.6
Entrez Gene 186249 Entrez gene
SwissProt Q20784 EMBL-EBI
WormBase CE01317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK20074 Hypothetical protein F54E7.5 [Caenorhabditis elegans] ref|NP_498215.1| F54E7.5 [Caenorhabditis elegans] 1.0E-155
blast AAK20075 Hypothetical protein F54E7.6 [Caenorhabditis elegans] ref|NP_498216.1| F54E7.6 [Caenorhabditis elegans] 1.0E-153
blast AAK20075 Hypothetical protein F54E7.6 [Caenorhabditis elegans] ref|NP_498216.1| F54E7.6 [Caenorhabditis elegans] 1.0E-150
blast CAE64309 Hypothetical protein CBG08986 [Caenorhabditis briggsae] 1.0E-136
blast CAE64309 Hypothetical protein CBG08986 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020791 2 290-312,491-513
Sequence
Target Sequence 
>C. ELEGANS:182110_AT
atgcctaggtccaagggttcaggttttgaaagaagagagaattggactgaccaacagaaa
aggtgccacgtatggatatcacaatggggtagatgttcggctattgagaaatcataaggt
acctcttatcaatgaagatactgaaattggtcggagtatcggagcaactgttgatgtgac
cagagatgatggagcattggaggttggaacacgggacaagattttccaagtttggaagca
aaacagaggaggattagtcgaatgggatagtcaaggggctggggtcgacattggatcgag
agcttccgtggcagatgatctcgtaaaacttcggcacacgattttcggtgtaaacgttgg
cccaacttcacgcagaaatattgtaggaccgtatcaagttggagagacaaaagggcaata
tttaaaacctgaaaacaacccattgccttcactgtaccaaaactattatgctggaagagg
tgactggtacaagagtaatttccaaagaccgggtgacgagtaccgtacccgcgaacagag
agcctgtccgtggtgttttgcagttgatccaacgtatcccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCTAGGTCCAAGGGTTCAGGTT 201 37 183 Antisense
TCAAGGGGCTGGGGTCGACATTGGA 280 627 453 Antisense
GACATTGGATCGAGAGCTTCCGTGG 696 369 469 Antisense
GAGCTTCCGTGGCAGATGATCTCGT 228 389 482 Antisense
AAACTTCGGCACACGATTTTCGGTG 440 125 508 Antisense
GTAAACGTTGGCCCAACTTCACGCA 177 461 532 Antisense
TGAAAACAACCCATTGCCTTCACTG 238 573 612 Antisense
TGCCTTCACTGTACCAAAACTATTA 637 583 626 Antisense
ACCCGCGAACAGAGAGCCTGTCCGT 651 87 709 Antisense
TGTCCGTGGTGTTTTGCAGTTGATC 600 557 727 Antisense
TGCAGTTGATCCAACGTATCCCACT 188 577 741 Antisense
Sequence Source Affymetrix Proprietary Database