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[182109_at]

Description R03H4.1 /REP_DB=WormBase Gene ID /WP=CE17199 /TR=Q21687 /GB=AAC48109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 29      4grp_total > 42      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 73.5
(-3)
P 		145.2
(3)
P 		83.9
(-2.1)
P 		83.2
(-2.2)
M 		72
B 56.5
(-2.8)
P 		108.8
(3)
P 		76.8
(-0.6)
A 		54.9
(-3)
A 		54
C 54.9
(-3)
P 		113
(3)
P 		92.7
(0.9)
P 		107.4
(2.4)
P 		58
avr 61.6
(-3) 		122.3
(3) 		84.5
(-0.7) 		81.8
(-1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 102.8
(3)
P 		62.6
(-3)
P 		79.8
(-0.4)
P 		69.9
(-1.9)
P 		80.7
(-0.3)
P 		76.4
(-0.9)
P 		40
B 109.2
(3)
P 		89.6
(-0.4)
P 		80.5
(-1.9)
P 		74.1
(-3)
P 		106.1
(2.5)
P 		86.3
(-0.9)
P 		35
C 87.2
(-0.6)
P 		124.1
(3)
P 		80.5
(-1.3)
P 		88.2
(-0.5)
P 		122.4
(2.8)
P 		63.3
(-3)
P 		61
avr 99.7
(2.3) 		92.1
(0.6) 		80.3
(-1.9) 		77.4
(-2.5) 		103.1
(3) 		75.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 26.7
(1.5)
P 		31.5
(3)
P 		21.9
(0)
P 		12.2
(-3)
M 		19
B 18
(-0.5)
P 		26.9
(3)
P 		17.8
(-0.6)
A 		11.7
(-3)
A 		15
C 18.2
(-3)
P 		32.5
(3)
P 		32.3
(2.9)
P 		18.1
(-3)
P 		14
avr 21
(-0.4) 		30.3
(3) 		24
(0.7) 		14
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 18.9
(-1.7)
P 		22.3
(1.3)
P 		17.4
(-3)
P 		17.7
(-2.7)
P 		24.3
(3)
P 		18.6
(-2)
P 		7
B 38
(1.7)
P 		29.8
(-0.4)
P 		19.6
(-3)
P 		19.6
(-3)
P 		43.1
(3)
P 		32.2
(0.2)
P 		24
C 32.3
(1)
P 		37.9
(2.5)
P 		20.5
(-2.2)
P 		17.7
(-3)
P 		39.6
(3)
P 		21.2
(-2)
P 		22
avr 29.7
(0.9) 		30
(1) 		19.2
(-2.7) 		18.3
(-3) 		35.7
(3) 		24
(-1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11552
Sequence Type Exemplar sequence
Representative Public ID R03H4.1 NCBI
Target Description R03H4.1 /REP_DB=WormBase Gene ID /WP=CE17199 /TR=Q21687 /GB=AAC48109.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072932 NCBI Caenorhabditis elegans R03H4.1 (R03H4.1) mRNA, complete cds. 11/11 None
SNAP00000020052 ENSEMBL cdna:SNAP chromosome:CEL140:V:9020625:9021896:1 11/11 None
GENEFINDER00000020059 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9019517:9021896:1 11/11 None
R03H4.1 ENSEMBL cdna:known chromosome:CEL140:V:9019517:9021905:1 gene:R03H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9019517-9021897(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H4.1
Entrez Gene 179279 Entrez gene
SwissProt Q21687 EMBL-EBI
WormBase CE17199 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505333 R03H4.1 [Caenorhabditis elegans] gb|AAC48109.1| Hypothetical protein R03H4.1 [Caenorhabditis elegans] 0.0
blast CAE72076 Hypothetical protein CBG19162 [Caenorhabditis briggsae] 0.0
blast NP_505335 R03H4.6 [Caenorhabditis elegans] gb|AAC48105.1| Hypothetical protein R03H4.6 [Caenorhabditis elegans] 0.0
blast NP_505333 R03H4.1 [Caenorhabditis elegans] gb|AAC48109.1| Hypothetical protein R03H4.1 [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.7E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505333.1 7 7-26,30-49,70-92,134-156,168-190,238-260,286-308
R03H4.1 7 7-26,30-49,70-92,134-156,168-190,238-260,286-308
GENEFINDER00000020059 7 7-26,30-49,70-92,134-156,168-190,238-260,286-308
Sequence
Target Sequence 
>C. ELEGANS:182109_AT
tatgctctaagtttcgctgatctcattatagaacaattcaaattaaattattccaattat
acatatgtctcaattgacgaaggctatggtttttttaccgactctccaggctccagtttg
gctctaagtgtgttcagaaaacttgttgcagaacacaaaccagatatactttttattacg
ccgagatattcatcttctcttcaatcacgaatacggaagaatgatgattatatacatcag
atgagtgaaaatatccaattttatgagagcattgcaaagaaaatttatattttgggatct
catccattatacaacataaatcatcttaatacctttttacattatcttatccagaattct
gatgaactggagtctcttcacctaaatcgttttaaatcagatgatgacatgagatgtgtt
aaaaagagattcgagaaagtgaaatgcaaaaagtgtcagttcttcgatttaagtcacgtt
tttgtcgaaggcgacaagtatctgacttttgatagagattcattgatttcctacgtggac
aatacgatacatctcaccagtgcgggactcaaactttgtcagcctgttttcgagaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCTCTAAGTTTCGCTGATCTCA 96 657 1312 Antisense
TATGGTTTTTTTACCGACTCTCCAG 286 655 1396 Antisense
CCAGGCTCCAGTTTGGCTCTAAGTG 598 271 1417 Antisense
AGATATTCATCTTCTCTTCAATCAC 116 67 1495 Antisense
GGGATCTCATCCATTATACAACATA 505 495 1605 Antisense
ACCTTTTTACATTATCTTATCCAGA 352 87 1642 Antisense
GAGTCTCTTCACCTAAATCGTTTTA 451 399 1681 Antisense
GAGATTCATTGATTTCCTACGTGGA 463 397 1826 Antisense
TACGATACATCTCACCAGTGCGGGA 99 647 1854 Antisense
GTGCGGGACTCAAACTTTGTCAGCC 216 479 1871 Antisense
TTTGTCAGCCTGTTTTCGAGAATCT 3 665 1886 Antisense
Sequence Source Affymetrix Proprietary Database