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[182108_at]

Description C16D9.1 /REP_DB=WormBase Gene ID /WP=CE27695 /TR=Q22902 /GB=AAB18288.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 53      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 296.2
(3)
P 		246.7
(1.7)
P 		166.8
(-0.5)
P 		71.4
(-3)
M 		225
B 343.3
(3)
P 		329.7
(2.7)
P 		178.8
(-0.1)
P 		25.4
(-3)
A 		318
C 383.4
(3)
P 		327.5
(1.9)
P 		250.9
(0.5)
P 		67.6
(-3)
M 		316
avr 341
(3) 		301.3
(2.2) 		198.8
(0) 		54.8
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 251.5
(1.2)
P 		332.4
(3)
P 		268.9
(1.6)
P 		216.8
(0.5)
P 		73.4
(-2.6)
P 		57.2
(-3)
A 		275
B 312.9
(3)
P 		303.6
(2.8)
P 		249.3
(1.6)
P 		163.7
(-0.2)
P 		74.4
(-2.1)
P 		32.2
(-3)
A 		281
C 486.9
(3)
P 		359.3
(1.3)
P 		290
(0.3)
P 		168.9
(-1.4)
P 		112.7
(-2.1)
P 		49
(-3)
M 		438
avr 350.4
(3) 		331.8
(2.6) 		269.4
(1.4) 		183.1
(-0.3) 		86.8
(-2.2) 		46.1
(-3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 107.9
(3)
P 		53.6
(-0.3)
P 		43.6
(-1)
P 		10.5
(-3)
M 		97
B 109.5
(3)
P 		81.4
(1.4)
P 		41.4
(-0.9)
P 		5.4
(-3)
A 		104
C 126.9
(3)
P 		94.2
(1.3)
P 		87.5
(1)
P 		11.4
(-3)
M 		116
avr 114.8
(3) 		76.4
(0.8) 		57.5
(-0.3) 		9.1
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 46.4
(-1.1)
P 		118.2
(3)
P 		58.6
(-0.4)
P 		55
(-0.6)
P 		22.1
(-2.5)
P 		13.9
(-3)
A 		104
B 108.9
(3)
P 		101.1
(2.5)
P 		60.5
(0)
P 		43.4
(-1.1)
P 		30.2
(-1.9)
P 		12
(-3)
A 		97
C 180.5
(3)
P 		109.6
(0.4)
P 		73.8
(-0.9)
P 		34
(-2.4)
P 		36.5
(-2.3)
P 		16.4
(-3)
M 		164
avr 111.9
(3) 		109.6
(2.9) 		64.3
(0.1) 		44.1
(-1.2) 		29.6
(-2) 		14.1
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11676
Sequence Type Exemplar sequence
Representative Public ID C16D9.1 NCBI
Target Description C16D9.1 /REP_DB=WormBase Gene ID /WP=CE27695 /TR=Q22902 /GB=AAB18288.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072727 NCBI Caenorhabditis elegans C16D9.1 (C16D9.1) mRNA, complete cds. 11/11 A 
SNAP00000043380 ENSEMBL cdna:SNAP chromosome:CEL140:V:8261906:8263735:1 11/11 None
GENEFINDER00000043386 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8262062:8263735:1 11/11 None
C16D9.1 ENSEMBL cdna:known chromosome:CEL140:V:8261906:8263894:1 gene:C16D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8261906-8263824(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16D9.1
Entrez Gene 179207 Entrez gene
SwissProt Q22902 EMBL-EBI
WormBase CE27695 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB18288 Hypothetical protein C16D9.1 [Caenorhabditis elegans] ref|NP_505128.1| C16D9.1 [Caenorhabditis elegans] 0.0
blast CAE66091 Hypothetical protein CBG11308 [Caenorhabditis briggsae] 1.0E-178
blast AAB18288 Hypothetical protein C16D9.1 [Caenorhabditis elegans] ref|NP_505128.1| C16D9.1 [Caenorhabditis elegans] 1.0E-172
blast CAE66091 Hypothetical protein CBG11308 [Caenorhabditis briggsae] 1.0E-155
blast CAE74014 Hypothetical protein CBG21662 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 6.7E-20
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-23
Pfam IPR003014 EMBL-EBI N/apple PAN 3.4E-8
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:182108_AT
gtggccactgtgaatgattgtcaagctcaatgcagtaacagtcagaccaagtacgatatt
acatgcaaaagtgcaatgtactatgaaaaagacaaagaatgtattttggcttcacaatcg
aaagcggatattcctgatttgttcattgatgatgacaaatctctgtatcttgaaaatagt
tgcctcgataaatctgataaatcagtggttgtcaaaacttcggatattttcaaaggatct
tcgaagttttctgaaaatgaatcttctcgttctgacggagaactggaaccactgaaaacg
gaaaagactacactttcgtcaattctctcatcatctacacacatggacattcaattatcc
ggatacgaaggaccatctgactctgtgagtaatcagaatcgagaagatcttctcactaca
aaaccaacaaccactacaactacaactaccacaaccactcaaaaaccgattgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCCACTGTGAATGATTGTCAAG 319 491 412 Antisense
AGCTCAATGCAGTAACAGTCAGACC 397 79 435 Antisense
GAATGTATTTTGGCTTCACAATCGA 15 333 508 Antisense
GATGATGACAAATCTCTGTATCTTG 449 411 559 Antisense
AAATGAATCTTCTCGTTCTGACGGA 649 119 666 Antisense
TCTGACGGAGAACTGGAACCACTGA 189 609 682 Antisense
GACTACACTTTCGTCAATTCTCTCA 564 373 717 Antisense
ATTCTCTCATCATCTACACACATGG 561 9 733 Antisense
TACGAAGGACCATCTGACTCTGTGA 316 649 775 Antisense
GAAGATCTTCTCACTACAAAACCAA 366 337 814 Antisense
AACCACTCAAAAACCGATTGCTCCA 302 147 864 Antisense
Sequence Source Affymetrix Proprietary Database