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[182107_at]

Description F37B4.8 /REP_DB=WormBase Gene ID /WP=CE17797 /TR=O45170 /GB=AAK18941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 26      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 51.3
(0.7)
P 		52.6
(0.8)
A 		3.3
(-3)
A 		81.4
(3)
M 		78
B 12.7
(-3)
A 		30.3
(-0.1)
A 		49.7
(3)
A 		47
(2.6)
A 		37
C 1.1
(-3)
A 		61.4
(3)
A 		33.6
(0.2)
P 		47.6
(1.6)
A 		60
avr 21.7
(-3) 		48.1
(1.3) 		28.9
(-1.8) 		58.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 71.5
(3)
P 		8.5
(-3)
A 		10.9
(-2.7)
A 		61.7
(2.1)
A 		8.2
(-3)
A 		22.9
(-1.6)
A 		63
B 52.7
(3)
P 		11.6
(-2.2)
A 		36.9
(1)
A 		34.1
(0.7)
A 		31.3
(0.3)
A 		5
(-3)
A 		48
C 30.5
(-1.5)
M 		30.1
(-1.6)
A 		15.6
(-3)
A 		76.3
(3)
A 		16.8
(-2.9)
A 		26.8
(-1.9)
A 		61
avr 51.6
(2.1) 		16.7
(-3) 		21.1
(-2.4) 		57.4
(3) 		18.8
(-2.7) 		18.2
(-2.8) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.7
(3)
P 		11.4
(0.5)
A 		0.9
(-3)
A 		11.9
(0.7)
M 		18
B 4
(-3)
A 		7.5
(-0.2)
A 		11.5
(3)
A 		10
(1.8)
A 		8
C 0.4
(-3)
A 		17.7
(3)
A 		11.7
(0.9)
P 		8
(-0.4)
A 		17
avr 7.7
(-3) 		12.2
(3) 		8
(-2.6) 		10
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 13.2
(1.9)
P 		3
(-2.7)
A 		2.4
(-3)
A 		15.6
(3)
A 		2.5
(-3)
A 		5.6
(-1.5)
A 		13
B 18.3
(3)
P 		3.9
(-2.3)
A 		9
(-0.4)
A 		9
(-0.4)
A 		12.7
(1)
A 		1.9
(-3)
A 		16
C 11.3
(0.9)
M 		9.2
(-0.2)
A 		4
(-3)
A 		15.3
(3)
A 		5.5
(-2.2)
A 		9
(-0.3)
A 		11
avr 14.3
(3) 		5.4
(-2.8) 		5.1
(-3) 		13.3
(2.3) 		6.9
(-1.8) 		5.5
(-2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182107_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15156
Sequence Type Exemplar sequence
Representative Public ID F37B4.8 NCBI
Target Description F37B4.8 /REP_DB=WormBase Gene ID /WP=CE17797 /TR=O45170 /GB=AAK18941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071384
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000026935 ENSEMBL cdna:SNAP chromosome:CEL140:V:2885763:2891844:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071384 4/11 Cross Hyb Matching Probes None
F37B4.8 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2886129-2890019(-) 88.59 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast E88979 protein F37B4.8 [imported] - Caenorhabditis elegans 0.0
blast AAK18941 Serpentine receptor, class w protein 4 [Caenorhabditis elegans] ref|NP_503785.3| Serpentine Receptor, class W family member (srw-4) [Caenorhabditis elegans] 1.0E-162
blast CAE62379 Hypothetical protein CBG06465 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR002619 EMBL-EBI Protein of unknown function CX 2.6E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000026935 6 117-135,203-225,297-319,360-382,408-430,445-467
Sequence
Target Sequence 
>C. ELEGANS:182107_AT
tcttccagtgttcaattcatcctctcatatattcatttgccttgccatgtcgtcccagta
tagagaaacatcatgtgagattttctgtggagaaaagtcgaaaacacaggtaaaaaagtt
ttttttcgctgaactgaaaactactgaaattttgtatttaaactcagaaagagcatacca
agagcacaaaaaatgtgcgaaaaatgtgcaaaaaatgtgcaaaaaatgtgcaaaaaatga
gcaaaaaatgtgcgaaaaatgtgcgaaaatgtgcgaaaaatgtgcaaaaaatgtgcaaaa
aatgtgcgaaaaatgtgcgaaaatgtgcgaaaaatgcgcgaaaaatgtgcgaaaaatgtg
cgaaaaatgtgcaaaaaatgtgcaaaaaatgtgcaaaaaatgtgcaaaaaatgttcggtt
tgttgcaaagtgttcccacaattttctcccgagagcaactaaaatgctttttataaagtt
tcttgcaaaattggaatttttttcaaatccacgcatccttcaattgtctaaaataagtat
ccgtttctttcataatttgcttctgattgtcatcaataacgtccacact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCAGTGTTCAATTCATCCTCT 199 619 1386 Antisense
CATCCTCTCATATATTCATTTGCCT 580 211 1403 Antisense
TATATTCATTTGCCTTGCCATGTCG 650 661 1413 Antisense
TTGCCATGTCGTCCCAGTATAGAGA 577 701 1427 Antisense
GGTTTGTTGCAAAGTGTTCCCACAA 532 505 1802 Antisense
TCCCACAATTTTCTCCCGAGAGCAA 554 597 1819 Antisense
GAATTTTTTTCAAATCCACGCATCC 412 325 1879 Antisense
TCCACGCATCCTTCAATTGTCTAAA 393 589 1893 Antisense
TCCGTTTCTTTCATAATTTGCTTCT 187 595 1925 Antisense
CATAATTTGCTTCTGATTGTCATCA 10 215 1936 Antisense
GATTGTCATCAATAACGTCCACACT 422 435 1950 Antisense
Sequence Source Affymetrix Proprietary Database