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[182106_at]

Description C34H4.1 /REP_DB=WormBase Gene ID /WP=CE25804 /TR=O45144 /GB=AAC04390.3 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 162.3
(0.6)
A 		69.1
(-1.5)
A 		268.1
(3)
A 		3.7
(-3)
A 		264
B 184.8
(2.3)
A 		67.6
(-1.1)
A 		209.2
(3)
A 		3.6
(-3)
A 		206
C 165.5
(1.7)
A 		134.9
(0.8)
A 		208.5
(3)
P 		10.8
(-3)
A 		198
avr 170.9
(1.4) 		90.5
(-0.7) 		228.6
(3) 		6
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 29.4
(-1.5)
A 		65.1
(0.9)
A 		95.5
(3)
A 		86.7
(2.4)
A 		60.7
(0.6)
A 		8
(-3)
A 		88
B 54
(1.7)
A 		54.7
(1.8)
A 		57.9
(2.3)
A 		62.2
(3)
A 		23.8
(-3)
A 		55.3
(1.9)
A 		38
C 80.5
(2)
A 		25.9
(-3)
A 		90.8
(3)
A 		27
(-2.9)
A 		38.9
(-1.8)
A 		40.5
(-1.7)
A 		65
avr 54.6
(-0.4) 		48.6
(-1.2) 		81.4
(3) 		58.6
(0.1) 		41.1
(-2.2) 		34.6
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 59.1
(2.1)
A 		15
(-1.8)
A 		70.1
(3)
A 		0.5
(-3)
A 		70
B 58.9
(3)
A 		16.7
(-1.4)
A 		48.5
(1.9)
A 		0.8
(-3)
A 		58
C 54.8
(1.5)
A 		38.8
(0.1)
A 		72.7
(3)
P 		1.8
(-3)
A 		71
avr 57.6
(2.4) 		23.5
(-0.9) 		63.8
(3) 		1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 5.4
(-2)
A 		23.2
(3)
A 		20.8
(2.3)
A 		22
(2.7)
A 		18.3
(1.6)
A 		1.9
(-3)
A 		21
B 18.8
(2)
A 		18.2
(1.7)
A 		14.1
(-0.6)
A 		16.5
(0.7)
A 		9.7
(-3)
A 		20.6
(3)
A 		11
C 29.9
(3)
A 		7.9
(-2.4)
A 		23.1
(1.3)
A 		5.4
(-3)
A 		12.6
(-1.2)
A 		13.5
(-1)
A 		25
avr 18
(1.9) 		16.4
(0.6) 		19.3
(3) 		14.6
(-0.9) 		13.5
(-1.8) 		12
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182106_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10398
Sequence Type Exemplar sequence
Representative Public ID C34H4.1 NCBI
Target Description C34H4.1 /REP_DB=WormBase Gene ID /WP=CE25804 /TR=O45144 /GB=AAC04390.3 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067696 NCBI Caenorhabditis elegans C34H4.1 (C34H4.1) mRNA, complete cds. 11/11 None
C34H4.1 ENSEMBL cdna:known chromosome:CEL140:IV:1555578:1557549:1 gene:C34H4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005505 4/11 Cross Hyb Matching Probes None
GENEFINDER00000005543 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1555583-1557530(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34H4.1
Entrez Gene 176963 Entrez gene
SwissProt O45144 EMBL-EBI
WormBase CE25804 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04390 Hypothetical protein C34H4.1 [Caenorhabditis elegans] ref|NP_500097.1| C34H4.1 [Caenorhabditis elegans] 0.0
blast CAE67961 Hypothetical protein CBG13565 [Caenorhabditis briggsae] 2.0E-97
blast AAK68467 Hypothetical protein Y41D4B.17 [Caenorhabditis elegans] ref|NP_500099.1| Y41D4B.17 [Caenorhabditis elegans] 4.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500097.1 1 7-24
C34H4.1 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:182106_AT
aggagaccagcaggcagctcattttccaaaatccagttatcacttattttactggaacaa
taagttccatgttttttgaccacattgagccgatccaatacacgctgcgaacgtggcata
ttcgagcgatcggtggaatcagctttaaggtttcccaacaatgggtagacatgtcgacgt
atcaaacaacagcggcgaccacgacagggtacacaatgagtcaaagtgtcagtaacaatt
caaccgttaactttaagtatacagagaatgctggtgacggtggaatgttcggttttatga
tcaacactgcggataagcagactgatatgaatgtaaccagctgttacaacacggattgca
tcactgaaaaatttgttcaaacaatgccagtgtacacagatattttccagtacccaaaga
actacacgactttgtacatggatcacacgaatacgaacgaaggaatcttctatctacagt
attgcagatcagaggccgctgtcggggtcagctccacaactccggcgtctatggagacta
caacaaaaacctcggcgactatttcgcttcacattcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGACCAGCAGGCAGCTCATTTT 703 55 587 Antisense
TTTTTGACCACATTGAGCCGATCCA 126 675 659 Antisense
CCGATCCAATACACGCTGCGAACGT 114 263 676 Antisense
GAACGTGGCATATTCGAGCGATCGG 217 347 695 Antisense
GAATCAGCTTTAAGGTTTCCCAACA 612 327 722 Antisense
GACGTATCAAACAACAGCGGCGACC 132 379 762 Antisense
CGGCGACCACGACAGGGTACACAAT 520 209 779 Antisense
GTATTGCAGATCAGAGGCCGCTGTC 241 453 1065 Antisense
TCCACAACTCCGGCGTCTATGGAGA 173 589 1099 Antisense
GACTACAACAAAAACCTCGGCGACT 247 335 1122 Antisense
GCGACTATTTCGCTTCACATTCTTC 614 289 1141 Antisense
Sequence Source Affymetrix Proprietary Database