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[182105_s_at]

Description F49E8.6 /REP_DB=WormBase Gene ID /WP=CE10796 /TR=Q20631 /GB=AAB03154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 71      6grp_total > 08      4grp_total > 14      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 258
1 2 3 4 range
A 330
(1.1)
P 		247.9
(-1.3)
P 		192.2
(-3)
P 		393.6
(3)
P 		201
B 381.1
(3)
P 		203.9
(-1.3)
P 		135.3
(-3)
P 		354.3
(2.3)
P 		246
C 307.7
(1)
P 		154.1
(-3)
P 		198
(-1.8)
P 		383.1
(3)
P 		229
avr 339.6
(1.9) 		202
(-2.2) 		175.2
(-3) 		377
(3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 427.7
(3)
P 		361.5
(1.1)
P 		364
(1.2)
P 		306.7
(-0.4)
P 		216.2
(-3)
P 		361.3
(1.1)
P 		212
B 403.2
(3)
P 		258.5
(-2)
P 		269.2
(-1.7)
P 		318.6
(0.1)
P 		240
(-2.7)
P 		230.3
(-3)
P 		173
C 407.3
(1.7)
P 		313.6
(-0.9)
P 		455
(3)
P 		327.8
(-0.5)
P 		297.5
(-1.3)
P 		237.2
(-3)
P 		218
avr 412.7
(3) 		311.2
(-0.8) 		362.7
(1.1) 		317.7
(-0.5) 		251.2
(-3) 		276.3
(-2.1) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 120.2
(3)
P 		53.8
(-2.7)
P 		50.3
(-3)
P 		57.6
(-2.4)
P 		70
B 121.5
(3)
P 		50.4
(-1.7)
P 		31.4
(-3)
P 		75.5
(-0.1)
P 		90
C 101.9
(3)
P 		44.3
(-3)
P 		69
(-0.4)
P 		64.6
(-0.9)
P 		58
avr 114.5
(3) 		49.5
(-3) 		50.2
(-2.9) 		65.9
(-1.5) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 78.8
(-1.7)
P 		128.6
(3)
P 		79.3
(-1.7)
P 		77.8
(-1.8)
P 		65.2
(-3)
P 		88
(-0.8)
P 		63
B 140.3
(3)
P 		86
(-1.3)
P 		65.4
(-3)
P 		84.4
(-1.5)
P 		97.5
(-0.4)
P 		85.9
(-1.4)
P 		75
C 151
(3)
P 		95.7
(-0.9)
P 		115.8
(0.5)
P 		65.9
(-3)
P 		96.3
(-0.9)
P 		79.4
(-2)
P 		85
avr 123.4
(3) 		103.4
(0.5) 		86.8
(-1.6) 		76
(-3) 		86.3
(-1.7) 		84.4
(-1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182105_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9708
Sequence Type Exemplar sequence
Representative Public ID F49E8.6 NCBI
Target Description F49E8.6 /REP_DB=WormBase Gene ID /WP=CE10796 /TR=Q20631 /GB=AAB03154.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068823 NCBI Caenorhabditis elegans F49E8.6 (F49E8.6) mRNA, complete cds. 11/11 None
SNAP00000021362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7553639:7554229:-1 11/11 None
GENEFINDER00000021368 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7553639:7554229:-1 11/11 None
F49E8.6 ENSEMBL cdna:known chromosome:CEL140:IV:7553516:7554366:-1 gene:F49E8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7553644-7554235(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49E8.6
Entrez Gene 177531 Entrez gene
SwissProt Q20631 EMBL-EBI
WormBase CE10796 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03154 Hypothetical protein F49E8.6 [Caenorhabditis elegans] ref|NP_501224.1| F49E8.6 [Caenorhabditis elegans] 7.0E-77
blast CAE61913 Hypothetical protein CBG05909 [Caenorhabditis briggsae] 7.0E-61
Sequence
Target Sequence 
>C. ELEGANS:182105_S_AT
cactatccgatgccaacatatccacaaggtccgcttgttcaacaaaacgagttctacttc
acctccgctggccaacaactccaatcggttccaactactacagtcgcatttgcaagaacc
gatctgcctggggcttacgacaacttctgtgagggattcctcgacggaccagacttctca
aaccgagtcccagacaggaacattccccctgctccaggatcgtattacttctactcgcat
ggcaacagctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTATCCGATGCCAACATATCCAC 217 197 115 Antisense
TATCCACAAGGTCCGCTTGTTCAAC 124 659 133 Antisense
CAAAACGAGTTCTACTTCACCTCCG 177 191 157 Antisense
CTCCAATCGGTTCCAACTACTACAG 527 235 193 Antisense
TTGCAAGAACCGATCTGCCTGGGGC 346 701 224 Antisense
TGGGGCTTACGACAACTTCTGTGAG 307 551 243 Antisense
TGTGAGGGATTCCTCGACGGACCAG 51 555 262 Antisense
GACCAGACTTCTCAAACCGAGTCCC 300 383 281 Antisense
CGAGTCCCAGACAGGAACATTCCCC 641 161 298 Antisense
CAGGATCGTATTACTTCTACTCGCA 6 209 329 Antisense
TCTACTCGCATGGCAACAGCTCAAC 24 615 344 Antisense
Sequence Source Affymetrix Proprietary Database