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[182104_at]

Description ZK1025.3 /REP_DB=WormBase Gene ID /WP=CE23491 /TR=Q9XXL6 /GB=CAA18370.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 56      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4717
1 2 3 4 range
A 32.2
(-3)
A 		2986.4
(1.2)
P 		4219
(3)
P 		3.5
(-3)
A 		4216
B 11.9
(-3)
A 		3596.1
(2.4)
P 		3983.8
(3)
P 		1.6
(-3)
A 		3982
C 19
(-3)
A 		3709.6
(1.7)
P 		4718.8
(3)
P 		22.1
(-3)
A 		4700
avr 21
(-3) 		3430.7
(1.8) 		4307.2
(3) 		9.1
(-3) 		4298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 460
1 2 3 4 5 6 range
A 122.7
(-1.3)
P 		432.3
(3)
P 		211.3
(-0.1)
P 		63.6
(-2.1)
A 		44.8
(-2.4)
A 		2
(-3)
A 		430
B 88.7
(-1.9)
P 		461.1
(3)
P 		147.2
(-1.1)
P 		52.3
(-2.3)
P 		20.3
(-2.8)
A 		2.1
(-3)
A 		459
C 76.8
(-1.8)
P 		381.7
(3)
P 		157
(-0.5)
P 		50.9
(-2.2)
A 		3
(-3)
A 		0.7
(-3)
A 		381
avr 96.1
(-1.7) 		425
(3) 		171.8
(-0.6) 		55.6
(-2.2) 		22.7
(-2.7) 		1.6
(-3) 		423
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1644
1 2 3 4 range
A 11.7
(-2.9)
A 		648.3
(0.5)
P 		1102.9
(3)
P 		0.5
(-3)
A 		1102
B 3.8
(-3)
A 		888.2
(2.8)
P 		923.1
(3)
P 		0.3
(-3)
A 		923
C 6.3
(-3)
A 		1066.5
(0.9)
P 		1644.6
(3)
P 		3.7
(-3)
A 		1641
avr 7.3
(-3) 		867.7
(1.3) 		1223.5
(3) 		1.5
(-3) 		1222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 22.6
(-2.1)
P 		153.8
(3)
P 		46
(-1.2)
P 		16.1
(-2.4)
A 		13.5
(-2.5)
A 		0.5
(-3)
A 		153
B 30.9
(-1.8)
P 		153.5
(3)
P 		35.8
(-1.6)
P 		13.9
(-2.5)
P 		8.2
(-2.7)
A 		0.8
(-3)
A 		153
C 28.5
(-1.5)
P 		116.5
(3)
P 		40
(-0.9)
P 		10.2
(-2.5)
A 		1
(-3)
A 		0.2
(-3)
A 		116
avr 27.3
(-1.9) 		141.3
(3) 		40.6
(-1.3) 		13.4
(-2.5) 		7.6
(-2.7) 		0.5
(-3) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182104_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1383
Sequence Type Exemplar sequence
Representative Public ID ZK1025.3 NCBI
Target Description ZK1025.3 /REP_DB=WormBase Gene ID /WP=CE23491 /TR=Q9XXL6 /GB=CAA18370.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060527 NCBI Caenorhabditis elegans ZK1025.3 (ZK1025.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038829 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11464629:11471339:-1 11/11 None
SNAP00000038819 ENSEMBL cdna:SNAP chromosome:CEL140:I:11465010:11474993:-1 11/11 None
ZK1025.3 ENSEMBL cdna:known chromosome:CEL140:I:11469142:11471190:-1 gene:ZK1025.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11469116-11471105(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1025.3
Entrez Gene 191492 Entrez gene
WormBase CE23491 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18370 Hypothetical protein ZK1025.3 [Caenorhabditis elegans] ref|NP_492928.1| ZK1025.3 [Caenorhabditis elegans] 0.0
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 0.0
blast CAA18365 Hypothetical protein ZK1025.7 [Caenorhabditis elegans] ref|NP_492929.1| ZK1025.7 [Caenorhabditis elegans] 1.0E-176
blast CAB04025 Hypothetical protein E03H4.2 [Caenorhabditis elegans] ref|NP_493145.2| E03H4.2 [Caenorhabditis elegans] 1.0E-138
blast CAB04025 Hypothetical protein E03H4.2 [Caenorhabditis elegans] ref|NP_493145.2| E03H4.2 [Caenorhabditis elegans] 1.0E-132
blast CAA18367 Hypothetical protein ZK1025.4 [Caenorhabditis elegans] ref|NP_492927.2| ZK1025.4 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.6E-54
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.6E-54
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.8E-112
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.6E-54
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 3.7E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492928.1 1 21-38
ZK1025.3 1 21-38
GENEFINDER00000038829 1 76-93
SNAP00000038819 1 114-131
Sequence
Target Sequence 
>C. ELEGANS:182104_AT
gacaaagtacatagctcttcctcggaatcagagccaacttctcacaatggtcacacttgg
tatcggacacgatattatgggagagatcagtttgaaggagcttcatccgaatactcaatt
ctatggagccgatccatctcccgaagtgaataagatcctctatgaagataagctgggagg
aaagtactaccgatacgcagttagtggagagaccggagtgcagaaatcaagtatttatac
agagcaaaaagaagagctggcttacagaaccgagaccaccgagcacatcgcagttgacta
cttcttcaagtacatcctcaacaaaagtctgatcgatattctatggattgatgtcgagca
gaatgagtttccgataatggagcaacttcatagaaatggagcaattgacaatgcaggtgt
cacaatttgtcagatgaatattgaagttcacagtggagtattcgagcaaccaattggcga
aaagcagatgtttcatgattttgtgtggagagttcttgaagatagaagatatattatgtt
gaggtcttactatgctgatccatttattcgaactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAGTACATAGCTCTTCCTCGG 553 365 405 Antisense
GGAATCAGAGCCAACTTCTCACAAT 570 533 428 Antisense
GGTCACACTTGGTATCGGACACGAT 560 503 453 Antisense
GGAGCTTCATCCGAATACTCAATTC 13 521 501 Antisense
TACTCAATTCTATGGAGCCGATCCA 76 645 516 Antisense
GAAAGTACTACCGATACGCAGTTAG 548 359 584 Antisense
GCTGGCTTACAGAACCGAGACCACC 600 293 660 Antisense
GCACATCGCAGTTGACTACTTCTTC 236 317 687 Antisense
GGAGTATTCGAGCAACCAATTGGCG 583 517 859 Antisense
GTTGAGGTCTTACTATGCTGATCCA 305 437 942 Antisense
TGCTGATCCATTTATTCGAACTTTT 506 581 957 Antisense
Sequence Source Affymetrix Proprietary Database