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[182103_at]

Description B0281.1 /REP_DB=WormBase Gene ID /WP=CE07712 /TR=O16617 /GB=AAB66087.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 30.1
(0.9)
A 		14.4
(-3)
A 		38.8
(3)
A 		21.9
(-1.2)
A 		24
B 55.7
(3)
A 		26.5
(-0.7)
A 		8.6
(-3)
A 		35.9
(0.5)
A 		47
C 49.8
(-1.2)
A 		52.3
(-1.1)
A 		10
(-3)
A 		143.1
(3)
A 		133
avr 45.2
(0.3) 		31.1
(-1.5) 		19.1
(-3) 		67
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 17.1
(-3)
A 		33.1
(-0.3)
A 		52.1
(3)
A 		42.5
(1.4)
A 		30.4
(-0.7)
A 		30.7
(-0.7)
A 		35
B 29.6
(-0.2)
A 		27.6
(-0.5)
A 		7.6
(-3)
A 		55.5
(3)
A 		34
(0.3)
A 		31
(-0.1)
A 		48
C 49.1
(3)
A 		15
(-2.1)
A 		44.5
(2.3)
A 		8.9
(-3)
A 		34.1
(0.8)
A 		28.9
(-0)
A 		40
avr 31.9
(0.9) 		25.2
(-3) 		34.7
(2.5) 		35.6
(3) 		32.8
(1.4) 		30.2
(-0.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 11
(3)
A 		3.1
(-3)
A 		10.1
(2.3)
A 		3.2
(-2.9)
A 		8
B 17.8
(3)
A 		6.6
(-1.3)
A 		2
(-3)
A 		7.6
(-0.9)
A 		16
C 16.5
(0.8)
A 		15
(0.3)
A 		3.5
(-3)
A 		24.1
(3)
A 		21
avr 15.1
(3) 		8.2
(-1.2) 		5.2
(-3) 		11.6
(0.9) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.2
(-3)
A 		11.8
(3)
A 		11.4
(2.7)
A 		10.8
(2.3)
A 		9.2
(1.2)
A 		7.5
(-0)
A 		9
B 10.3
(1)
A 		9.2
(0.4)
A 		1.8
(-3)
A 		14.7
(3)
A 		13.8
(2.6)
A 		11.6
(1.6)
A 		13
C 18.2
(3)
A 		4.6
(-2)
A 		11.3
(0.5)
A 		1.8
(-3)
A 		11
(0.4)
A 		9.7
(-0.1)
A 		16
avr 10.6
(1.6) 		8.5
(-2.4) 		8.2
(-3) 		9.1
(-1.3) 		11.3
(3) 		9.6
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182103_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4276
Sequence Type Exemplar sequence
Representative Public ID B0281.1 NCBI
Target Description B0281.1 /REP_DB=WormBase Gene ID /WP=CE07712 /TR=O16617 /GB=AAB66087.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061834 NCBI Caenorhabditis elegans B0281.1 (B0281.1) mRNA, complete cds. 11/11 None
B0281.1 ENSEMBL cdna:known chromosome:CEL140:II:2313068:2314928:1 gene:B0281.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033219 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2313066-2314927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0281.1
Entrez Gene 181895 Entrez gene
SwissProt O16617 EMBL-EBI
WormBase CE07712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66087 Hypothetical protein B0281.1 [Caenorhabditis elegans] ref|NP_494235.1| B0281.1 [Caenorhabditis elegans] 4.0E-93
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 9.0E-10
blast AAB66146 Hypothetical protein ZK1240.5 [Caenorhabditis elegans] ref|NP_494237.1| ZK1240.5 [Caenorhabditis elegans] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:182103_AT
tcactcttcgccattccaaattgacagttctcaattccaagacataggaagcttgtgcct
tataaaaaaattcataaatgcgagcccatgctttcttgtgccaattgcgtttcatatgtc
gctttgtccgaagcgtgaaatatccaattatttaagtgccaacgaaaatgttgtaaataa
acccaatgagttgggaagaaaactcgactctgagctggaaaaactaaaaacatcgctgct
caaaaccaaaaagctccaggagaaacttgagagaaaagttcggacaacttcccaccgaaa
tgtgaagaacatccgtataatcttgccgaaaaacaagctcatgtgtcgaacttgtgagga
atttggagctcataaggattatacaaaagaattgctgatatcaagagctgctgaacttcg
gagaacattaggatgtaggctcacgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTCTTCGCCATTCCAAATTGAC 604 625 75 Antisense
GACAGTTCTCAATTCCAAGACATAG 582 367 97 Antisense
TAAATGCGAGCCCATGCTTTCTTGT 414 639 149 Antisense
TGCTTTCTTGTGCCAATTGCGTTTC 48 579 163 Antisense
GCGTTTCATATGTCGCTTTGTCCGA 591 291 181 Antisense
GAAGAAAACTCGACTCTGAGCTGGA 42 341 269 Antisense
AAAACATCGCTGCTCAAAACCAAAA 576 129 301 Antisense
GTTCGGACAACTTCCCACCGAAATG 447 295 352 Antisense
GAACATCCGTATAATCTTGCCGAAA 629 349 381 Antisense
AGAGCTGCTGAACTTCGGAGAACAT 391 69 478 Antisense
ACATTAGGATGTAGGCTCACGCAAA 474 105 499 Antisense
Sequence Source Affymetrix Proprietary Database