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[182102_at]

Description F59A3.7 /REP_DB=WormBase Gene ID /WP=CE11428 /TR=P91358 /GB=AAB37820.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 90.8
(-1.2)
A 		70.3
(-2.8)
A 		68.2
(-3)
A 		141.5
(3)
A 		73
B 76.2
(3)
A 		71.9
(2.3)
A 		40.5
(-3)
A 		56.9
(-0.2)
A 		36
C 75
(-1)
A 		40.7
(-3)
A 		48.4
(-2.5)
A 		142.8
(3)
M 		102
avr 80.7
(-0.2) 		61
(-2.2) 		52.4
(-3) 		113.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 91.9
(0)
A 		68.8
(-1.3)
A 		124.3
(2)
P 		142
(3)
P 		107.1
(0.9)
A 		40.7
(-3)
A 		101
B 79.9
(-3)
A 		92.7
(-0.4)
A 		96.3
(0.4)
A 		109.1
(3)
A 		86.4
(-1.7)
A 		99.3
(1)
A 		29
C 89.6
(-0.2)
A 		88.9
(-0.3)
A 		89
(-0.2)
A 		131.2
(3)
A 		77.5
(-1.1)
A 		53.2
(-3)
A 		78
avr 87.1
(-0.8) 		83.5
(-1.2) 		103.2
(0.7) 		127.4
(3) 		90.3
(-0.5) 		64.4
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 33.1
(3)
A 		15.3
(-3)
A 		17.8
(-2.2)
A 		20.7
(-1.2)
A 		18
B 24.3
(3)
A 		17.8
(0.4)
A 		9.4
(-3)
A 		12.1
(-1.9)
A 		15
C 24.8
(3)
A 		11.7
(-3)
A 		16.9
(-0.6)
A 		24.1
(2.7)
M 		13
avr 27.4
(3) 		14.9
(-2.9) 		14.7
(-3) 		19
(-1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 16.9
(-1.4)
A 		24.5
(0.4)
A 		27.1
(1)
P 		36
(3)
P 		32.3
(2.1)
A 		9.9
(-3)
A 		26
B 27.8
(-1.1)
A 		30.9
(0.3)
A 		23.4
(-3)
A 		28.9
(-0.6)
A 		35.1
(2.2)
A 		37
(3)
A 		14
C 33.2
(3)
A 		27.1
(0.6)
A 		22.7
(-1.1)
A 		26.4
(0.4)
A 		25.1
(-0.2)
A 		17.8
(-3)
A 		15
avr 26
(-0.1) 		27.5
(0.8) 		24.4
(-1.2) 		30.4
(2.7) 		30.8
(3) 		21.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2091
Sequence Type Exemplar sequence
Representative Public ID F59A3.7 NCBI
Target Description F59A3.7 /REP_DB=WormBase Gene ID /WP=CE11428 /TR=P91358 /GB=AAB37820.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059217 NCBI Caenorhabditis elegans F59A3.7 (F59A3.7) mRNA, complete cds. 11/11 None
F59A3.7 ENSEMBL cdna:known chromosome:CEL140:I:5517296:5518566:-1 gene:F59A3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013467 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5517295-5518566(-) 96.55 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A3.7
Entrez Gene 186578 Entrez gene
SwissProt P91358 EMBL-EBI
WormBase CE11428 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37820 Hypothetical protein F59A3.7 [Caenorhabditis elegans] ref|NP_491618.1| F59A3.7 [Caenorhabditis elegans] 1.0E-126
blast CAE67077 Hypothetical protein CBG12486 [Caenorhabditis briggsae] 1.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491618.1 5 29-51,55-74,81-98,124-146,199-216
F59A3.7 5 29-51,55-74,81-98,124-146,199-216
Sequence
Target Sequence 
>C. ELEGANS:182102_AT
gtatattattttctcttccttttgtttccacttgtttcattttcatattctcgctcagaa
tgaaatccaaacaaatttttggagttttagcagtttatacgataatttcgcttttgaaca
caattttcaaaatgagtgttggattaagtgatggtgattggtgggagagatgttttgtgg
gttctgtggagacctttcattcgattatcacaatattgcattcaattttccaatttttca
tctcaattatattaattcgaatgagtttttggtatgtgattgtattaacccatatttgtc
actttgagctacaaaaatccaaagttgtcgatacatcaagtgtatacctacctacttacc
taccttcctacaagcctgcctcatgcttaacaacttacctaaagacatgccaacggaaat
ggatgcaagttgctgctgttgtcactgttgtgtcctgtgttgctggtgttgcccgtattt
taaaaatgatgaaaacgaggaaagaagtcatgtttcaaagtgttccagcttttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATATTATTTTCTCTTCCTTTTGT 617 453 179 Antisense
TTGTTTCCACTTGTTTCATTTTCAT 383 705 200 Antisense
TTCATTTTCATATTCTCGCTCAGAA 502 689 214 Antisense
GGAGACCTTTCATTCGATTATCACA 443 519 366 Antisense
AACCCATATTTGTCACTTTGAGCTA 162 147 465 Antisense
CAAGTGTATACCTACCTACTTACCT 524 181 515 Antisense
GCCTGCCTCATGCTTAACAACTTAC 311 283 552 Antisense
GATGCAAGTTGCTGCTGTTGTCACT 316 413 600 Antisense
TGTCACTGTTGTGTCCTGTGTTGCT 348 559 618 Antisense
TTGCTGGTGTTGCCCGTATTTTAAA 501 699 638 Antisense
GTTTCAAAGTGTTCCAGCTTTTCTG 663 449 690 Antisense
Sequence Source Affymetrix Proprietary Database