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[182100_s_at] 7TM chemoreceptor, srd family /// 7TM chemoreceptor, srd family

Description C13B7.4 /REP_DB=WormBase Gene ID /WP=CE20502 /TR=Q9UAU6 /GB=AAD14706.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 02      4grp_total > 12      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 81.8
(-3)
P 		92.3
(-2.7)
P 		82.3
(-3)
A 		277.7
(3)
P 		196
B 104
(3)
P 		67.4
(-3)
A 		71.3
(-2.4)
M 		94.3
(1.4)
P 		37
C 120.4
(1.2)
P 		101.9
(-0.2)
A 		66.5
(-3)
P 		143.5
(3)
P 		77
avr 102.1
(-1.3) 		87.2
(-2.2) 		73.4
(-3) 		171.8
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 42.7
(-3)
A 		64.4
(0.1)
A 		84.5
(3)
P 		79.5
(2.3)
P 		74.3
(1.5)
P 		84.1
(2.9)
P 		42
B 99.2
(0.5)
M 		92.4
(-0)
P 		57.7
(-3)
A 		127.9
(3)
A 		70.1
(-1.9)
A 		63.1
(-2.5)
A 		70
C 93
(-0.7)
M 		180.3
(3)
A 		78.1
(-1.3)
A 		48
(-2.6)
A 		42.9
(-2.8)
A 		37.8
(-3)
A 		143
avr 78.3
(-1) 		112.4
(3) 		73.4
(-1.6) 		85.1
(-0.2) 		62.4
(-2.9) 		61.7
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 29.8
(-0.1)
P 		20
(-3)
P 		21.5
(-2.6)
A 		40.6
(3)
P 		21
B 33.2
(3)
P 		16.7
(-2.9)
A 		16.5
(-3)
M 		20.1
(-1.7)
P 		17
C 39.9
(3)
P 		29.3
(-0.8)
A 		23.2
(-3)
P 		24.2
(-2.6)
P 		17
avr 34.3
(3) 		22
(-2.3) 		20.4
(-3) 		28.3
(0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 7.9
(-3)
A 		22.9
(3)
A 		18.4
(1.2)
P 		20.2
(1.9)
P 		22.4
(2.8)
P 		20.5
(2)
P 		15
B 34.5
(3)
M 		30.7
(1.9)
P 		14
(-3)
A 		33.9
(2.8)
A 		28.5
(1.2)
A 		23.5
(-0.2)
A 		21
C 34.5
(0.3)
M 		55
(3)
A 		19.9
(-1.6)
A 		9.7
(-3)
A 		13.9
(-2.4)
A 		12.7
(-2.6)
A 		45
avr 25.6
(-0.4) 		36.2
(3) 		17.4
(-3) 		21.3
(-1.8) 		21.6
(-1.7) 		18.9
(-2.5) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182100_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15906
Sequence Type Exemplar sequence
Representative Public ID C13B7.4 NCBI
Target Description C13B7.4 /REP_DB=WormBase Gene ID /WP=CE20502 /TR=Q9UAU6 /GB=AAD14706.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071264(11), NM_071291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071264 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-71) (srd-71) mRNA, complete cds. 11/11 None
NM_071291 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-72) (srd-72) mRNA, complete cds. 11/11 A 
C13B7.4 ENSEMBL cdna:known chromosome:CEL140:V:2423115:2426034:-1 gene:C13B7.4 11/11 A 
Y45G12C.9 ENSEMBL cdna:known chromosome:CEL140:V:2531394:2534313:-1 gene:Y45G12C.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022916 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022922 7/11 Cross Hyb Matching Probes None
SNAP00000043309 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043325 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2533488-2534313(-) 100.0 100.0
chrV:2425209-2426034(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
7TM chemoreceptor, srd family
Gene Symbol srd-71
srd-72
Ensembl C13B7.4
Y45G12C.9
Entrez Gene 182562 Entrez gene
189937 Entrez gene
SwissProt Q9N4Y6 EMBL-EBI
WormBase CE21942 Wormbase
CE21942 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14706 Serpentine receptor, class d (delta) protein 71 [Caenorhabditis elegans] ref|NP_503692.1| Serpentine Receptor, class D (delta) family member (srd-72) [Caenorhabditis elegans] ref|NP_503665.2| Serpentine Receptor, class D (delta) family member (srd-71) [Caenorhabditis elegans] gb|AAF60584.1| Hypothetical protein Y45G12C.9 [Caenorhabditis elegans] 1.0E-169
blast CAE58046 Hypothetical protein CBG01123 [Caenorhabditis briggsae] 1.0E-126
blast CAA94133 Hypothetical protein F15A2.4 [Caenorhabditis elegans] ref|NP_510251.1| Serpentine Receptor, class D (delta) family member (srd-50) [Caenorhabditis elegans] sp|Q19474|SRD50_CAEEL Serpentine receptor class delta-50 (Protein srd-50) 3.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503665.2 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
NP_503692.1 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
C13B7.4 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
Y45G12C.9 7 10-32,53-75,90-112,133-155,183-205,232-254,259-281
Sequence
Target Sequence 
>C. ELEGANS:182100_S_AT
gggtctcgacacgatattcactgtttactacgcattttactttatattttccggaaccgc
gcaactttttgtgctctacctcatcgtgttccatagcccgccgagtttacaagatatgcg
gaaattaatgatggctacgtcactatcgcaagttatcatgtgctcgtcggcatttttgac
gcaagttagaattgtcccgatccaattctccatcgcacttttatctttcgggccttgttc
aattgtaggcccgcaggcttgcctggccacgtataatctgttgaacacatcaggttgcct
cgtggtggcctccctcctccatatgatgtattaccgccgacgtttgatgtcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCTCGACACGATATTCACTGTT 21 497 15 Antisense
TATATTTTCCGGAACCGCGCAACTT 157 661 57 Antisense
TGATGGCTACGTCACTATCGCAAGT 518 565 143 Antisense
GTTATCATGTGCTCGTCGGCATTTT 71 447 166 Antisense
CTCCATCGCACTTTTATCTTTCGGG 20 237 222 Antisense
TATCTTTCGGGCCTTGTTCAATTGT 311 659 236 Antisense
GTTCAATTGTAGGCCCGCAGGCTTG 287 445 251 Antisense
TGCCTGGCCACGTATAATCTGTTGA 384 585 274 Antisense
CACATCAGGTTGCCTCGTGGTGGCC 26 195 300 Antisense
CTCCCTCCTCCATATGATGTATTAC 121 235 324 Antisense
TTACCGCCGACGTTTGATGTCTTCT 485 681 345 Antisense
Sequence Source Affymetrix Proprietary Database