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[182099_at]

Description C47D12.5 /REP_DB=WormBase Gene ID /WP=CE05433 /TR=Q18665 /GB=CAA93763.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1301
1 2 3 4 range
A 128.5
(-2.5)
A 		27.5
(-3)
A 		17.1
(-3)
A 		1311.9
(3)
P 		1295
B 16.8
(-3)
A 		54.9
(-2.8)
A 		10.6
(-3)
A 		1280.2
(3)
P 		1270
C 60.5
(-2.9)
A 		39.4
(-3)
A 		76.2
(-2.8)
A 		1199.9
(3)
P 		1161
avr 68.6
(-2.8) 		40.6
(-3) 		34.6
(-3) 		1264
(3) 		1229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 130.3
(-1.7)
A 		76.9
(-3)
A 		177.1
(-0.6)
P 		193
(-0.3)
M 		331.7
(3)
P 		268.1
(1.5)
P 		255
B 133.8
(-3)
A 		163.8
(-1.7)
A 		142
(-2.7)
A 		274.8
(3)
A 		260.7
(2.4)
P 		242.5
(1.6)
P 		141
C 102.7
(-3)
A 		221.5
(2.1)
P 		132.4
(-1.7)
A 		214.5
(1.8)
P 		217.4
(2)
P 		241.3
(3)
P 		139
avr 122.3
(-3) 		154.1
(-1.7) 		150.5
(-1.9) 		227.4
(1.3) 		269.9
(3) 		250.6
(2.2) 		148
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 46.8
(-1.6)
A 		6
(-3)
A 		4.5
(-3)
A 		192
(3)
P 		188
B 5.3
(-2.9)
A 		13.6
(-2.8)
A 		2.5
(-3)
A 		272.8
(3)
P 		270
C 20
(-2.7)
A 		11.3
(-3)
A 		26.5
(-2.5)
A 		202.3
(3)
P 		191
avr 24
(-2.6) 		10.3
(-3) 		11.2
(-3) 		222.4
(3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 24
(-3)
A 		27.4
(-2.7)
A 		38.6
(-1.8)
P 		49
(-1)
M 		100.1
(3)
P 		65.3
(0.3)
P 		76
B 46.6
(-2)
A 		54.5
(-1.3)
A 		34.5
(-3)
A 		72.8
(0.2)
A 		105.9
(3)
P 		90.4
(1.7)
P 		71
C 38.1
(-2.4)
A 		67.6
(1.3)
P 		33.7
(-3)
A 		43.1
(-1.8)
P 		70.4
(1.7)
P 		80.8
(3)
P 		47
avr 36.2
(-2.9) 		49.8
(-1.5) 		35.6
(-3) 		55
(-0.9) 		92.1
(3) 		78.8
(1.6) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182099_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3958
Sequence Type Exemplar sequence
Representative Public ID C47D12.5 NCBI
Target Description C47D12.5 /REP_DB=WormBase Gene ID /WP=CE05433 /TR=Q18665 /GB=CAA93763.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064094 NCBI Caenorhabditis elegans C47D12.5 (C47D12.5) mRNA, complete cds. 11/11 None
SNAP00000023906 ENSEMBL cdna:SNAP chromosome:CEL140:II:11683497:11685176:-1 11/11 None
GENEFINDER00000023914 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11683497:11685511:-1 11/11 None
C47D12.5 ENSEMBL cdna:known chromosome:CEL140:II:11683497:11688167:-1 gene:C47D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11683493-11688164(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47D12.5
Entrez Gene 183549 Entrez gene
SwissProt Q18665 EMBL-EBI
WormBase CE05433 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93763 Hypothetical protein C47D12.5 [Caenorhabditis elegans] ref|NP_496495.1| C47D12.5 [Caenorhabditis elegans] 0.0
blast CAA93763 Hypothetical protein C47D12.5 [Caenorhabditis elegans] ref|NP_496495.1| C47D12.5 [Caenorhabditis elegans] 1.0E-130
blast CAE59453 Hypothetical protein CBG02832 [Caenorhabditis briggsae] 3.0E-43
blast CAE59453 Hypothetical protein CBG02832 [Caenorhabditis briggsae] 4.0E-43
blast CAE59453 Hypothetical protein CBG02832 [Caenorhabditis briggsae] 6.0E-43
blast CAE58740 Hypothetical protein CBG01928 [Caenorhabditis briggsae] 8.0E-23
blast CAE58740 Hypothetical protein CBG01928 [Caenorhabditis briggsae] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496495.1 1 306-328
C47D12.5 1 306-328
SNAP00000023906 1 168-190
GENEFINDER00000023914 2 33-55,220-242
Sequence
Target Sequence 
>C. ELEGANS:182099_AT
tcgtgcatcacgattgttctcaagaagatccacgaggaagatgagaacgcttttgaggga
atcatgatggactgctccgatcagctcattgtaagtagcccagatctcccgcaaggaatc
cagttcacaaactataaccaaaatggagtattttctaaccatcgaagcaacttatcgatc
acatacagcttcacgactgattcttttcaaaatgcggagaaaattcgaagatccttctct
tcagttgtgcttccatcgtacgagaaagaatacgagattagcacaattgttgcgctgatt
ggattcagtgtattggtggtttcgttgtgctgctcattttgcatttattcgtattgttat
gagaaaaagctgcgtgaggccagaaacgataaggttatctatcaaaaaaggctgctcgat
aattccgatgatagtccaacttcttcgaatgatactgaaaatgggagtgtttcatcttct
gctcctgaaatcgtagttattaaatcatcaattgattcctctgtcccattgcttgatgtc
cccgagcttcaagagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTGCATCACGATTGTTCTCAAGA 245 605 643 Antisense
TCATGATGGACTGCTCCGATCAGCT 447 619 704 Antisense
TCATTGTAAGTAGCCCAGATCTCCC 465 619 728 Antisense
GATCTCCCGCAAGGAATCCAGTTCA 206 419 745 Antisense
GCAACTTATCGATCACATACAGCTT 664 319 809 Antisense
ACAGCTTCACGACTGATTCTTTTCA 440 107 827 Antisense
AGTTGTGCTTCCATCGTACGAGAAA 34 65 885 Antisense
TGTATTGGTGGTTTCGTTGTGCTGC 437 561 951 Antisense
GTTGTGCTGCTCATTTTGCATTTAT 460 437 966 Antisense
CATCTTCTGCTCCTGAAATCGTAGT 460 213 1115 Antisense
TGATGTCCCCGAGCTTCAAGAGACT 135 567 1176 Antisense
Sequence Source Affymetrix Proprietary Database