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[182098_s_at] 7TM chemoreceptor, srt family /// 7TM chemoreceptor, srt family

Description F47D2.5 /REP_DB=WormBase Gene ID /WP=CE10694 /TR=Q22983 /GB=AAG24114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 4.6
(-3)
A 		6.2
(-2.9)
A 		3.6
(-3)
A 		200.2
(3)
P 		197
B 37.6
(-2)
A 		19
(-2.5)
A 		3.1
(-3)
A 		213.5
(3)
P 		210
C 18.4
(-3)
A 		35.3
(-2.6)
A 		26
(-2.8)
A 		304.3
(3)
P 		286
avr 20.2
(-2.8) 		20.2
(-2.8) 		10.9
(-3) 		239.3
(3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 50.4
(2)
A 		4.2
(-3)
A 		54
(2.4)
A 		8.4
(-2.5)
A 		52.5
(2.2)
A 		59.6
(3)
A 		55
B 7.8
(-3)
A 		18
(-1.9)
A 		25.4
(-1)
A 		48.1
(1.5)
A 		61.4
(3)
A 		42.6
(0.9)
A 		54
C 2.8
(-3)
A 		72
(3)
P 		3.3
(-3)
A 		23.6
(-1.2)
A 		36.2
(-0.1)
A 		59.7
(1.9)
A 		69
avr 20.3
(-3) 		31.4
(-1) 		27.6
(-1.7) 		26.7
(-1.9) 		50
(2.3) 		54
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 1.7
(-2.8)
A 		1.3
(-2.9)
A 		0.9
(-3)
A 		29.3
(3)
P 		28
B 12
(-1.5)
A 		4.7
(-2.5)
A 		0.7
(-3)
A 		45.5
(3)
P 		45
C 6.1
(-3)
A 		10.2
(-2.5)
A 		9.1
(-2.6)
A 		51.3
(3)
P 		45
avr 6.6
(-2.5) 		5.4
(-2.7) 		3.6
(-3) 		42
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 9.3
(0.3)
A 		1.5
(-3)
A 		11.8
(1.3)
A 		2.1
(-2.8)
A 		15.9
(3)
A 		14.5
(2.4)
A 		14
B 2.7
(-3)
A 		6
(-2.1)
A 		6.2
(-2.1)
A 		12.7
(-0.3)
A 		24.9
(3)
A 		15.9
(0.6)
A 		22
C 1.1
(-2.9)
A 		22
(3)
P 		0.8
(-3)
A 		4.7
(-1.9)
A 		11.7
(0.1)
A 		20
(2.4)
A 		21
avr 4.4
(-3) 		9.8
(-0.5) 		6.3
(-2.1) 		6.5
(-2) 		17.5
(3) 		16.8
(2.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182098_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15332
Sequence Type Exemplar sequence
Representative Public ID F47D2.5 NCBI
Target Description F47D2.5 /REP_DB=WormBase Gene ID /WP=CE10694 /TR=Q22983 /GB=AAG24114.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071776(11), NM_071780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071776 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-36) (srt-36) mRNA, complete cds. 11/11 None
NM_071780 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-37) (srt-37) mRNA, complete cds. 11/11 None
SNAP00000032763 ENSEMBL cdna:SNAP chromosome:CEL140:V:4266189:4268127:-1 11/11 None
SNAP00000032769 ENSEMBL cdna:SNAP chromosome:CEL140:V:4279662:4282572:-1 11/11 None
GENEFINDER00000032780 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4261022:4271172:-1 9/11 None
F47D2.5 ENSEMBL cdna:known chromosome:CEL140:V:4266189:4268127:-1 gene:F47D2.5 11/11 None
F47D2.8 ENSEMBL cdna:known chromosome:CEL140:V:4279662:4281613:-1 gene:F47D2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4266188-4268127(-) 100.0 100.0
chrV:4279661-4281613(-) 99.8 99.8
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
7TM chemoreceptor, srt family
Gene Symbol srt-36
srt-37
Ensembl F47D2.5
F47D2.8
Entrez Gene 185926 Entrez gene
185929 Entrez gene
SwissProt Q22983 EMBL-EBI
Q22987 EMBL-EBI
WormBase CE10694 Wormbase
CE35317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24114 Serpentine receptor, class t protein 36 [Caenorhabditis elegans] ref|NP_504177.1| Serpentine Receptor, class T family member (srt-36) [Caenorhabditis elegans] 0.0
blast AAG24116 Serpentine receptor, class t protein 37 [Caenorhabditis elegans] ref|NP_504181.2| Serpentine Receptor, class T family member (srt-37) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.4E-104
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.8E-108
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.8E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504177.1 7 37-59,72-94,109-131,152-174,197-219,240-262,272-294
NP_504181.2 7 37-59,72-94,109-131,152-174,197-219,240-262,272-294
F47D2.5 7 37-59,72-94,109-131,152-174,197-219,240-262,272-294
F47D2.8 7 37-59,72-94,109-131,152-174,197-219,240-262,272-294
SNAP00000032763 7 37-59,72-94,109-131,152-174,197-219,240-262,272-294
SNAP00000032769 6 48-70,85-107,128-150,173-195,216-238,248-270
GENEFINDER00000032780 18 37-59,72-94,109-131,152-174,200-222,243-265,311-333,346-368,383-405,426-448,474-496,516-538,607-624,645-667,680-702,723-745,768-790,811-833
Sequence
Target Sequence 
>C. ELEGANS:182098_S_AT
tcggctgctgattttcttcaatccaaatattgaagcacaactatttgaaggaaggaaaac
gtttattattctggggttttcacttgtctatggcggttatttcctgttcaccaccccgca
tgtctacaattctaaacatcttgcgtggtttttcgatccgatgatttttcccggcagggc
tcatgattatgataatttttcgcacgcgttcaacaatttctcaatcgtcgcaattacgtg
tgtattgtacatcccattttatgaaattgtcaggaaaaggctcaaggatgctcactcaca
ttcacgggctcaaaatatgaaactccaagttttcatccaatctgttcttatatgtattgc
cacccaaatcgctagtatcatttatgtattcatgaatttattcaaagtttcaacgtgtgt
aattctcattggacatgctctatggcaatttgttcaaggagcacctgtattcatttacat
tgggctcaatgaacaaattcgcaaacgattttttcaattgctaaggtgccatgggaacgg
agttgggtcttctgtacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTGCTGATTTTCTTCAATCCA 573 607 408 Antisense
ACATCTTGCGTGGTTTTTCGATCCG 70 107 543 Antisense
ATTTTTCCCGGCAGGGCTCATGATT 153 13 571 Antisense
TTCGCACGCGTTCAACAATTTCTCA 316 697 606 Antisense
AAAAGGCTCAAGGATGCTCACTCAC 265 133 682 Antisense
CACTCACATTCACGGGCTCAAAATA 350 197 700 Antisense
AACTCCAAGTTTTCATCCAATCTGT 237 141 728 Antisense
TCTGTTCTTATATGTATTGCCACCC 351 607 748 Antisense
TATTGCCACCCAAATCGCTAGTATC 513 665 762 Antisense
TTCTCATTGGACATGCTCTATGGCA 361 691 830 Antisense
GAACGGAGTTGGGTCTTCTGTACGA 117 347 942 Antisense
Sequence Source Affymetrix Proprietary Database