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[182097_at]

Description F21F12.1 /REP_DB=WormBase Gene ID /WP=CE09546 /TR=O02245 /GB=CAB04166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 59.9
(-1.3)
A 		44.1
(-2.6)
A 		38.5
(-3)
A 		116.1
(3)
A 		78
B 53.7
(1.7)
A 		63.2
(3)
A 		38.8
(-0.4)
A 		20.7
(-3)
A 		43
C 94.2
(1)
A 		66.1
(-0.6)
A 		23.8
(-3)
A 		129.2
(3)
M 		105
avr 69.3
(0.9) 		57.8
(-0.4) 		33.7
(-3) 		88.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 73
(3)
A 		35.5
(-1)
A 		43.9
(-0.1)
A 		44.9
(0)
A 		42.5
(-0.2)
A 		16.2
(-3)
A 		57
B 50.6
(2.1)
A 		54.2
(2.7)
A 		56.4
(3)
A 		24.8
(-2)
A 		53.2
(2.5)
A 		18.3
(-3)
A 		38
C 71.1
(2.2)
A 		81.2
(3)
A 		44.5
(-0)
A 		39.4
(-0.4)
A 		8
(-3)
A 		37.4
(-0.6)
A 		73
avr 64.9
(3) 		57
(1.8) 		48.3
(0.6) 		36.4
(-1.2) 		34.6
(-1.4) 		24
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 21.8
(3)
A 		9.6
(-3)
A 		10.1
(-2.8)
A 		17
(0.6)
A 		12
B 17.1
(3)
A 		15.6
(2.3)
A 		9
(-0.8)
A 		4.4
(-3)
A 		13
C 31.2
(3)
A 		19
(-0.2)
A 		8.3
(-3)
A 		21.8
(0.5)
M 		23
avr 23.4
(3) 		14.7
(-0.7) 		9.1
(-3) 		14.4
(-0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.5
(3)
A 		12.6
(2.4)
A 		9.6
(0.6)
A 		11.4
(1.7)
A 		12.8
(2.6)
A 		3.9
(-3)
A 		10
B 17.6
(1.4)
A 		18.1
(1.6)
A 		13.7
(-0.2)
A 		6.6
(-3)
A 		21.6
(3)
A 		6.8
(-2.9)
A 		15
C 26.4
(3)
A 		24.8
(2.6)
A 		11.3
(-0.8)
A 		7.9
(-1.7)
A 		2.6
(-3)
A 		12.5
(-0.5)
A 		24
avr 19.2
(3) 		18.5
(2.6) 		11.5
(-1) 		8.6
(-2.5) 		12.3
(-0.6) 		7.7
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2365
Sequence Type Exemplar sequence
Representative Public ID F21F12.1 NCBI
Target Description F21F12.1 /REP_DB=WormBase Gene ID /WP=CE09546 /TR=O02245 /GB=CAB04166.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061203 NCBI Caenorhabditis elegans F21F12.1 (F21F12.1) mRNA, complete cds. 11/11 None
SNAP00000031935 ENSEMBL cdna:SNAP chromosome:CEL140:I:14921898:14923453:1 11/11 None
GENEFINDER00000031940 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14921898:14928922:1 11/11 None
F21F12.1 ENSEMBL cdna:known chromosome:CEL140:I:14921741:14923689:1 gene:F21F12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14921828-14923620(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21F12.1
Entrez Gene 173364 Entrez gene
SwissProt O02245 EMBL-EBI
WormBase CE09546 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04166 Hypothetical protein F21F12.1 [Caenorhabditis elegans] ref|NP_493604.1| F21F12.1 [Caenorhabditis elegans] 2.0E-94
blast CAB04166 Hypothetical protein F21F12.1 [Caenorhabditis elegans] ref|NP_493604.1| F21F12.1 [Caenorhabditis elegans] 3.0E-88
blast CAB04166 Hypothetical protein F21F12.1 [Caenorhabditis elegans] ref|NP_493604.1| F21F12.1 [Caenorhabditis elegans] 8.0E-88
blast CAE72624 Hypothetical protein CBG19820 [Caenorhabditis briggsae] 4.0E-41
blast CAE72624 Hypothetical protein CBG19820 [Caenorhabditis briggsae] 2.0E-40
blast CAE72624 Hypothetical protein CBG19820 [Caenorhabditis briggsae] 5.0E-40
Sequence
Target Sequence 
>C. ELEGANS:182097_AT
atggacccaagcccgttgaagagaagaaaagtagaggatggtgaagataggattttggca
aaatgcgaaaaagctgctgacactgttgaaattgtcgatctatcgccaatgccattacta
actgacgaagctggaccttcaacctctacaaatgttcaagcatcacaatcacaggagcaa
ttacaaccacagatggatttgaaacttagagaactccttctttcttcaccagcacatcta
ttcgggcttcataccattcccgcaagtggctcaaacagtcagcagccagacgacaacaac
cctccacaggcagctgtaacaagttgggaaaactggttatgctttttggcaaccaactta
tcaccagctcagtggcagggctactggcttgcacattgtgcattatttggagatcaagca
gttcccgttcatctcctcagcttcttccaaggacacatctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACCCAAGCCCGTTGAAGAGAA 386 49 13 Antisense
TCGATCTATCGCCAATGCCATTACT 384 603 107 Antisense
GGACCTTCAACCTCTACAAATGTTC 634 321 145 Antisense
CTTAGAGAACTCCTTCTTTCTTCAC 48 223 217 Antisense
TCTTCACCAGCACATCTATTCGGGC 446 615 235 Antisense
TCTATTCGGGCTTCATACCATTCCC 63 607 249 Antisense
TACCATTCCCGCAAGTGGCTCAAAC 636 649 264 Antisense
TGGCAACCAACTTATCACCAGCTCA 606 545 359 Antisense
GGCTACTGGCTTGCACATTGTGCAT 61 539 391 Antisense
TGGAGATCAAGCAGTTCCCGTTCAT 622 549 420 Antisense
AGCTTCTTCCAAGGACACATCTCAC 345 79 451 Antisense
Sequence Source Affymetrix Proprietary Database