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[182095_at]

Description K07H8.7 /REP_DB=WormBase Gene ID /WP=CE18027 /TR=O45175 /GB=AAC04422.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 6.5
(3)
A 		1.7
(-3)
A 		5.4
(1.6)
A 		5.9
(2.3)
A 		5
B 0.8
(-3)
A 		12.2
(-0.5)
A 		0.8
(-3)
A 		27.9
(3)
A 		27
C 1.4
(-2.2)
A 		0.9
(-3)
A 		1.5
(-2.1)
A 		4.8
(3)
A 		4
avr 2.9
(-2.8) 		4.9
(-1.7) 		2.6
(-3) 		12.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.6
(0.6)
A 		7.6
(-0.9)
A 		18.2
(3)
A 		11.8
(0.6)
A 		2
(-3)
A 		11.9
(0.7)
A 		16
B 8.8
(0.1)
A 		4.7
(-1.6)
A 		6.5
(-0.9)
A 		1.1
(-3)
A 		9.9
(0.5)
A 		16.2
(3)
A 		15
C 1.4
(-2.8)
A 		0.6
(-3)
A 		22.3
(3)
A 		1.2
(-2.8)
A 		6.9
(-1.3)
A 		16.9
(1.5)
A 		22
avr 7.3
(-1.4) 		4.3
(-3) 		15.7
(3) 		4.7
(-2.8) 		6.3
(-1.9) 		15
(2.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.4
(3)
A 		0.4
(-3)
A 		1.4
(-0)
A 		0.9
(-1.5)
A 		2
B 0.3
(-2.9)
A 		3
(-0.1)
A 		0.2
(-3)
A 		5.9
(3)
A 		6
C 0.5
(-0)
A 		0.2
(-3)
A 		0.5
(-0)
A 		0.8
(3)
A 		1
avr 1.1
(-1.7) 		1.2
(-1.3) 		0.7
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.1
(-0.4)
A 		2.7
(0.7)
A 		4
(3)
A 		3
(1.2)
A 		0.6
(-3)
A 		2.9
(1.1)
A 		3
B 3
(-0.2)
A 		1.6
(-1.6)
A 		1.6
(-1.6)
A 		0.3
(-3)
A 		4
(0.9)
A 		6
(3)
A 		6
C 0.5
(-2.7)
A 		0.2
(-3)
A 		5.7
(3)
A 		0.2
(-3)
A 		2.2
(-0.8)
A 		5.7
(3)
A 		6
avr 1.9
(-1.9) 		1.5
(-2.5) 		3.8
(1.2) 		1.2
(-3) 		2.3
(-1.2) 		4.9
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8752
Sequence Type Exemplar sequence
Representative Public ID K07H8.7 NCBI
Target Description K07H8.7 /REP_DB=WormBase Gene ID /WP=CE18027 /TR=O45175 /GB=AAC04422.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068984 NCBI Caenorhabditis elegans K07H8.7 (K07H8.7) mRNA, complete cds. 11/11 None
GENEFINDER00000006931 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8259409:8259960:-1 11/11 None
K07H8.7 ENSEMBL cdna:known chromosome:CEL140:IV:8259369:8259960:-1 gene:K07H8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006911 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8259374-8259966(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07H8.7
Entrez Gene 187127 Entrez gene
SwissProt O45175 EMBL-EBI
WormBase CE18027 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04422 Hypothetical protein K07H8.7 [Caenorhabditis elegans] ref|NP_501385.1| K07H8.7 [Caenorhabditis elegans] 2.0E-53
blast AAC04422 Hypothetical protein K07H8.7 [Caenorhabditis elegans] ref|NP_501385.1| K07H8.7 [Caenorhabditis elegans] 7.0E-47
blast AAB37897 Hypothetical protein B0432.11 [Caenorhabditis elegans] ref|NP_493697.1| B0432.11 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501385.1 1 15-37
K07H8.7 1 15-37
GENEFINDER00000006931 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:182095_AT
tctatattcatctgatacttctcaaatcacaaatcttttcaatggcactcattatatcac
tgatttctggagttttgatattatgcagtcaaaaaggtggaggatcaaaaacgaagaatg
cagattctcgtacaaaaaaatcagcgtcgacttctattgtgtctccaattgaaacaactg
caataccaaaagatagtgtgatggtaaaaccagagccaccgaaagaagaaacaaagagta
agaaaagtgttatccagaactctataaaaatgcttcgtggaaagaaaaaccttcaaaaag
caaccacattgcaaaagaaaactgaaacggattcacagcatactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATATTCATCTGATACTTCTCAA 26 615 35 Antisense
ACTTCTCAAATCACAAATCTTTTCA 665 101 51 Antisense
AATGGCACTCATTATATCACTGATT 654 161 75 Antisense
ATCACTGATTTCTGGAGTTTTGATA 614 25 90 Antisense
CAGCGTCGACTTCTATTGTGTCTCC 252 203 176 Antisense
TGTGTCTCCAATTGAAACAACTGCA 415 555 192 Antisense
GTAAAACCAGAGCCACCGAAAGAAG 668 459 238 Antisense
GAAAAGTGTTATCCAGAACTCTATA 136 355 276 Antisense
AACTCTATAAAAATGCTTCGTGGAA 36 139 292 Antisense
AAACCTTCAAAAAGCAACCACATTG 315 125 321 Antisense
CTGAAACGGATTCACAGCATACTCA 167 239 356 Antisense
Sequence Source Affymetrix Proprietary Database