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[182094_at]

Description F42A6.2 /REP_DB=WormBase Gene ID /WP=CE17054 /TR=O44489 /GB=AAB92047.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.2
(-3)
A 		8.3
(3)
A 		6.6
(1)
A 		7.3
(1.8)
A 		5
B 4.8
(-2.6)
A 		30.2
(3)
A 		3.1
(-3)
A 		9.7
(-1.5)
A 		27
C 4.2
(-3)
A 		30.2
(2)
A 		35.2
(3)
A 		26.8
(1.4)
A 		31
avr 4.1
(-3) 		22.9
(3) 		15
(0.5) 		14.6
(0.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 51.4
(3)
A 		2.5
(-3)
A 		3.6
(-2.9)
A 		3.8
(-2.8)
A 		5
(-2.7)
A 		6.3
(-2.5)
A 		49
B 6.2
(-1.4)
A 		6.7
(-1.2)
A 		4.9
(-1.9)
A 		1.8
(-3)
A 		18.4
(3)
A 		2
(-2.9)
A 		17
C 5.8
(-2.2)
A 		6
(-2.2)
A 		2.4
(-3)
A 		3.6
(-2.7)
A 		29
(3)
A 		2.9
(-2.9)
A 		27
avr 21.1
(3) 		5.1
(-2.3) 		3.6
(-2.8) 		3.1
(-3) 		17.5
(1.8) 		3.7
(-2.8) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.2
(-2.1)
A 		1.8
(3)
A 		1.7
(2.1)
A 		1.1
(-3)
A 		1
B 1.5
(-2.3)
A 		7.5
(3)
A 		0.7
(-3)
A 		2.1
(-1.8)
A 		7
C 1.4
(-3)
A 		8.7
(1)
A 		12.3
(3)
A 		4.5
(-1.3)
A 		11
avr 1.4
(-3) 		6
(3) 		4.9
(1.6) 		2.6
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.5
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		1
(-2.9)
A 		1.5
(-2.5)
A 		1.5
(-2.5)
A 		9
B 2.1
(-1.6)
A 		2.2
(-1.5)
A 		1.2
(-2.4)
A 		0.5
(-3)
A 		7.5
(3)
A 		0.7
(-2.8)
A 		7
C 2.1
(-2)
A 		1.8
(-2.2)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		9.4
(3)
A 		1
(-2.7)
A 		9
avr 4.6
(1.3) 		1.6
(-2) 		0.9
(-2.8) 		0.7
(-3) 		6.1
(3) 		1.1
(-2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10538
Sequence Type Exemplar sequence
Representative Public ID F42A6.2 NCBI
Target Description F42A6.2 /REP_DB=WormBase Gene ID /WP=CE17054 /TR=O44489 /GB=AAB92047.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067927 NCBI Caenorhabditis elegans F42A6.2 (F42A6.2) mRNA, complete cds. 11/11 None
F42A6.2 ENSEMBL cdna:known chromosome:CEL140:IV:3341289:3341935:1 gene:F42A6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037859 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3341294-3341941(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A6.2
Entrez Gene 185646 Entrez gene
SwissProt O44489 EMBL-EBI
WormBase CE17054 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92047 Hypothetical protein F42A6.2 [Caenorhabditis elegans] ref|NP_500328.1| F42A6.2 [Caenorhabditis elegans] 7.0E-65
Sequence
Target Sequence 
>C. ELEGANS:182094_AT
atgcttgatgtttggtggacactgatgcaccacaattgccgagccgtgcagaacacctct
ccaaccaaaacaccacttcccacgctatttttctggcataaattccaacatgaagctgtg
ttttgtactttttgtcttattcggtgctgttctagtgtcccaagcaaggaaacacgcgaa
tttttcctaaaaaacctagattttcagttcctcgccgaccctgaaccacgttcaactctt
gctgctccgaccccaaccccagctgctccagaactccgttcaactctgtctgctccaact
ccaacaccggctccatctggctcttctggcttttcatttggctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTGATGTTTGGTGGACACTGA 563 41 13 Antisense
GGACACTGATGCACCACAATTGCCG 185 527 29 Antisense
TGCACCACAATTGCCGAGCCGTGCA 20 579 38 Antisense
CTTCCCACGCTATTTTTCTGGCATA 644 219 88 Antisense
GGCATAAATTCCAACATGAAGCTGT 282 537 107 Antisense
ATGAAGCTGTGTTTTGTACTTTTTG 506 43 122 Antisense
GTACTTTTTGTCTTATTCGGTGCTG 225 459 137 Antisense
TTATTCGGTGCTGTTCTAGTGTCCC 503 679 149 Antisense
GCTGTTCTAGTGTCCCAAGCAAGGA 512 295 158 Antisense
CAAGCAAGGAAACACGCGAATTTTT 502 183 173 Antisense
TCTTCTGGCTTTTCATTTGGCTCAA 546 617 334 Antisense
Sequence Source Affymetrix Proprietary Database