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[182093_at]

Description C18G1.7 /REP_DB=WormBase Gene ID /WP=CE17423 /TR=O61918 /GB=AAC17759.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 26
(-0.2)
A 		25.6
(-0.3)
A 		7.2
(-3)
A 		48.2
(3)
A 		41
B 7.4
(-3)
A 		18.6
(-0.5)
A 		24
(0.6)
A 		34.8
(3)
A 		27
C 41.5
(0.5)
A 		27.5
(-1)
A 		9.6
(-3)
A 		64.2
(3)
A 		55
avr 25
(-1.1) 		23.9
(-1.3) 		13.6
(-3) 		49.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.6
(-3)
A 		20.6
(-0.3)
A 		41.5
(3)
A 		5.1
(-2.8)
A 		36
(2.1)
A 		4.5
(-2.9)
A 		38
B 23.3
(-0.1)
A 		38.8
(2.3)
A 		43.2
(3)
A 		5
(-3)
A 		34.8
(1.7)
A 		22.2
(-0.3)
A 		38
C 30.9
(1.4)
M 		41.8
(3)
A 		4.3
(-2.6)
A 		1.7
(-3)
A 		26.4
(0.7)
A 		15.6
(-0.9)
A 		40
avr 19.3
(0.1) 		33.7
(3) 		29.7
(2.2) 		3.9
(-3) 		32.4
(2.7) 		14.1
(-0.9) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.5
(3)
A 		5.6
(-0.1)
A 		1.9
(-3)
A 		7
(1)
A 		8
B 2.4
(-3)
A 		4.6
(-0.4)
A 		5.6
(0.8)
A 		7.4
(3)
A 		5
C 13.8
(3)
A 		7.9
(-0.4)
A 		3.4
(-3)
A 		10.8
(1.3)
A 		10
avr 8.6
(3) 		6
(-0.1) 		3.6
(-3) 		8.4
(2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-3)
A 		7.3
(0.9)
A 		9
(1.9)
A 		1.3
(-2.6)
A 		10.9
(3)
A 		1.1
(-2.8)
A 		10
B 8.1
(0.2)
A 		12.9
(2.4)
A 		10.5
(1.3)
A 		1.3
(-3)
A 		14.2
(3)
A 		8.3
(0.3)
A 		13
C 11.4
(2.3)
M 		12.8
(3)
A 		1.1
(-2.6)
A 		0.3
(-3)
A 		8.5
(0.9)
A 		5.2
(-0.6)
A 		13
avr 6.7
(0.4) 		11
(2.9) 		6.9
(0.5) 		1
(-3) 		11.2
(3) 		4.9
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15221
Sequence Type Exemplar sequence
Representative Public ID C18G1.7 NCBI
Target Description C18G1.7 /REP_DB=WormBase Gene ID /WP=CE17423 /TR=O61918 /GB=AAC17759.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071874(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071874 NCBI Caenorhabditis elegans C18G1.7 (C18G1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000018237 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4745676:4747903:1 11/11 None
C18G1.7 ENSEMBL cdna:known chromosome:CEL140:V:4745383:4747903:1 gene:C18G1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018225 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4745382-4747903(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.7
Entrez Gene 182797 Entrez gene
SwissProt O61918 EMBL-EBI
WormBase CE17423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17759 Hypothetical protein C18G1.7 [Caenorhabditis elegans] ref|NP_504275.1| C18G1.7 [Caenorhabditis elegans] 0.0
blast CAE64182 Hypothetical protein CBG08808 [Caenorhabditis briggsae] 1.0E-132
blast CAE64182 Hypothetical protein CBG08808 [Caenorhabditis briggsae] 1.0E-121
blast AAB65328 Hypothetical protein F39G3.2 [Caenorhabditis elegans] ref|NP_504273.2| F39G3.2 [Caenorhabditis elegans] 8.0E-92
blast AAB65328 Hypothetical protein F39G3.2 [Caenorhabditis elegans] ref|NP_504273.2| F39G3.2 [Caenorhabditis elegans] 6.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 8.5E-104
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-90
Sequence
Target Sequence 
>C. ELEGANS:182093_AT
gaccacacttggatcaatcgttgatttcgatgaactaattgttccgaaaaatggttactc
gagtgttttggcattatcaattcaaaagttgggtcaggaaaatgtgggagcattggaatt
tgaaaatacgagagttcaactagatttatcaaatgataaaactggatttgacaccagttc
gttgaaaaatccagcgctagtggataagaagggtcctccaaaacttattttcaaaacctc
ttccattgaaataatccttacccattctgtccgaaaattcatcaaaactacggatcgaac
cctgaaagttgctcacggtaccctgattcactatcgatataatggaggaaaattattgtc
gaagaaaatgaaagatttttcaattttcgacggccacaattttgacggccacattgagaa
tatgaaaaacactaccaaaattatttttggagttggacaatcaatttttaaatcggaaat
catatggaaattaaatgagtgtatagaagaaattaaagctgccaacatttgtcgaagtac
agttaccttttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCACACTTGGATCAATCGTTGAT 62 383 753 Antisense
GTTACTCGAGTGTTTTGGCATTATC 151 447 806 Antisense
TGGATTTGACACCAGTTCGTTGAAA 353 549 915 Antisense
CTTATTTTCAAAACCTCTTCCATTG 74 223 976 Antisense
TCCTTACCCATTCTGTCCGAAAATT 584 589 1007 Antisense
GGATCGAACCCTGAAAGTTGCTCAC 618 501 1044 Antisense
ACGGTACCCTGATTCACTATCGATA 94 95 1067 Antisense
TTTTTCAATTTTCGACGGCCACAAT 267 675 1128 Antisense
GACGGCCACAATTTTGACGGCCACA 195 377 1141 Antisense
AAGCTGCCAACATTTGTCGAAGTAC 327 149 1268 Antisense
GTCGAAGTACAGTTACCTTTTGCAA 270 475 1283 Antisense
Sequence Source Affymetrix Proprietary Database