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[182092_at]

Description K03B4.6 /REP_DB=WormBase Gene ID /WP=CE07326 /TR=Q27503 /GB=AAA97994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 17      6grp_total > 44      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 116.9
(3)
P 		82
(-1.5)
P 		94.5
(0.1)
M 		70.1
(-3)
A 		47
B 135.4
(3)
P 		70.5
(-3)
A 		96.7
(-0.6)
A 		106.1
(0.3)
P 		65
C 128
(3)
P 		87.4
(-0.5)
P 		59.1
(-3)
P 		96.5
(0.3)
P 		69
avr 126.8
(3) 		80
(-3) 		83.4
(-2.6) 		90.9
(-1.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 86
(3)
A 		41.2
(-3)
A 		78.4
(2)
P 		77.6
(1.9)
A 		44.2
(-2.6)
A 		53.5
(-1.4)
P 		45
B 54.1
(-0.5)
P 		79.5
(3)
A 		73
(2.1)
A 		35.8
(-3)
A 		41.7
(-2.2)
A 		46.9
(-1.5)
A 		44
C 76
(2.4)
P 		51.5
(0.6)
M 		84.1
(3)
P 		10
(-2.5)
A 		2.8
(-3)
A 		65.1
(1.6)
A 		81
avr 72
(2.2) 		57.4
(0.4) 		78.5
(3) 		41.1
(-1.6) 		29.6
(-3) 		55.2
(0.1) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 42.6
(3)
P 		17.8
(-1.6)
P 		24.7
(-0.3)
M 		10.3
(-3)
A 		32
B 43.2
(3)
P 		17.4
(-3)
A 		22.4
(-1.8)
A 		22.6
(-1.8)
P 		26
C 42.4
(3)
P 		25.1
(-1)
P 		20.6
(-2)
P 		16.3
(-3)
P 		26
avr 42.7
(3) 		20.1
(-2.2) 		22.6
(-1.6) 		16.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.9
(-0.4)
A 		14.6
(-1.6)
A 		17.1
(0.7)
P 		19.7
(3)
A 		13.3
(-2.7)
A 		13
(-3)
P 		7
B 18.8
(0.3)
P 		26.4
(3)
A 		17.7
(-0.1)
A 		9.5
(-3)
A 		16.9
(-0.4)
A 		17.5
(-0.2)
A 		17
C 28.2
(3)
P 		15.7
(0.3)
M 		21.4
(1.5)
P 		2
(-2.8)
A 		0.9
(-3)
A 		21.8
(1.6)
A 		27
avr 21
(3) 		18.9
(1.8) 		18.7
(1.7) 		10.4
(-3) 		10.4
(-3) 		17.4
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15295
Sequence Type Exemplar sequence
Representative Public ID K03B4.6 NCBI
Target Description K03B4.6 /REP_DB=WormBase Gene ID /WP=CE07326 /TR=Q27503 /GB=AAA97994.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071857 NCBI Caenorhabditis elegans K03B4.6 (K03B4.6) mRNA, complete cds. 11/11 None
SNAP00000000709 ENSEMBL cdna:SNAP chromosome:CEL140:V:4670844:4674355:-1 10/11 None
GENEFINDER00000000719 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4670844:4672891:-1 11/11 None
K03B4.6 ENSEMBL cdna:known chromosome:CEL140:V:4670844:4675959:-1 gene:K03B4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4670843-4675959(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03B4.6
Entrez Gene 186921 Entrez gene
SwissProt Q27503 EMBL-EBI
WormBase CE07326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97994 Hypothetical protein K03B4.6 [Caenorhabditis elegans] ref|NP_504258.1| K03B4.6 [Caenorhabditis elegans] 0.0
blast AAA97994 Hypothetical protein K03B4.6 [Caenorhabditis elegans] ref|NP_504258.1| K03B4.6 [Caenorhabditis elegans] 1.0E-153
blast AAK68612 Hypothetical protein ZK105.5 [Caenorhabditis elegans] ref|NP_504996.2| ZK105.5 [Caenorhabditis elegans] 6.0E-56
blast AAK68612 Hypothetical protein ZK105.5 [Caenorhabditis elegans] ref|NP_504996.2| ZK105.5 [Caenorhabditis elegans] 7.0E-56
blast CAB05489 Hypothetical protein F14H3.9 [Caenorhabditis elegans] ref|NP_507043.1| F14H3.9 [Caenorhabditis elegans] 5.0E-41
blast CAB05489 Hypothetical protein F14H3.9 [Caenorhabditis elegans] ref|NP_507043.1| F14H3.9 [Caenorhabditis elegans] 3.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.7E-6
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.8E-54
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.4E-7
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 5.4E-32
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 7.8E-54
Sequence
Target Sequence 
>C. ELEGANS:182092_AT
ctgacgttcaatctaactacccgacgtgaagcctttacatttggaaagcagtgcgtcttg
aaagttttaaatgaaagccaagagtgtgatccagaggctgttcaatttataactgaaaat
tatctgcaaatagttgattacctaacgattaaatccaacgattgccaggatgttcattct
cattatcacaaacttcattgcgatttgattgatgatgaatataataaagaatatgagaga
ttgatatggggtgataagaaagttgaggatactggcttgttcatgatacaactaggccgg
gaactcattgaatgcgagtctcactcatgtcacaattctggtggcattgaaatcggaaat
ttgaaagaagaaattttggcgatggaaatctatggcagaaattattcgtggaaatgtctg
tacgacattaggagaccctcaatgaagactttaatggaaaagttattgtgcctacgtgat
agtaaattaggggacgatcaagaatgccggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGACGTTCAATCTAACTACCCGAC 45 237 1099 Antisense
CTACCCGACGTGAAGCCTTTACATT 23 225 1115 Antisense
GAGTGTGATCCAGAGGCTGTTCAAT 678 401 1180 Antisense
GATTGCCAGGATGTTCATTCTCATT 33 435 1258 Antisense
TCATTCTCATTATCACAAACTTCAT 149 619 1272 Antisense
GAGGATACTGGCTTGTTCATGATAC 399 403 1363 Antisense
GATACAACTAGGCCGGGAACTCATT 617 421 1383 Antisense
GCGAGTCTCACTCATGTCACAATTC 226 291 1412 Antisense
TCTGTACGACATTAGGAGACCCTCA 492 607 1515 Antisense
AAAGTTATTGTGCCTACGTGATAGT 263 121 1557 Antisense
GGGGACGATCAAGAATGCCGGAGAA 547 497 1588 Antisense
Sequence Source Affymetrix Proprietary Database