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[182091_s_at]

Description T04A11.4 /REP_DB=WormBase Gene ID /WP=CE13122 /TR=O18648 /GB=CAB05604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 51      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 51      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1170
1 2 3 4 range
A 1044.6
(-0.5)
P 		1631.5
(3)
P 		1326
(1.2)
P 		623.2
(-3)
P 		1008
B 867
(-1.5)
P 		1728.8
(3)
P 		1088.4
(-0.4)
P 		589.3
(-3)
P 		1140
C 1095.7
(0.4)
P 		1498.4
(3)
P 		1119.1
(0.6)
P 		558.4
(-3)
P 		940
avr 1002.4
(-0.6) 		1619.6
(3) 		1177.8
(0.4) 		590.3
(-3) 		1029

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 1098
(-0.6)
P 		1107.8
(-0.5)
P 		1607.1
(3)
P 		1411.9
(1.6)
P 		964.6
(-1.6)
P 		760.6
(-3)
P 		847
B 1117.7
(-0.7)
P 		1251.5
(0.1)
P 		1713.9
(3)
P 		1457.5
(1.4)
P 		744.8
(-3)
P 		882.5
(-2.1)
P 		969
C 966
(-2)
P 		1357.8
(1)
P 		1613.2
(3)
P 		1527.3
(2.3)
P 		842.1
(-3)
P 		895.7
(-2.6)
P 		771
avr 1060.6
(-1.4) 		1239
(-0) 		1644.7
(3) 		1465.6
(1.7) 		850.5
(-3) 		846.3
(-3) 		798
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 340
1 2 3 4 range
A 380.3
(3)
P 		354.1
(2.5)
P 		346.6
(2.3)
P 		91.2
(-3)
P 		289
B 276.5
(0)
P 		427
(3)
P 		252.2
(-0.5)
P 		125.6
(-3)
P 		301
C 362.7
(1.8)
P 		430.8
(3)
P 		390
(2.3)
P 		94.2
(-3)
P 		337
avr 339.8
(1.7) 		404
(3) 		329.6
(1.5) 		103.7
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 202.4
(-2.5)
P 		394
(3)
P 		350
(1.7)
P 		358.1
(2)
P 		291.1
(0)
P 		185.2
(-3)
P 		209
B 388.9
(1.5)
P 		416.6
(3)
P 		416.2
(3)
P 		386
(1.4)
P 		302.6
(-3)
P 		329.1
(-1.6)
P 		114
C 358
(0.6)
P 		414.3
(3)
P 		410.6
(2.8)
P 		307.1
(-1.5)
P 		272.5
(-3)
P 		299.8
(-1.8)
P 		142
avr 316.4
(-1) 		408.3
(3) 		392.3
(2.3) 		350.4
(0.5) 		288.7
(-2.2) 		271.4
(-3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182091_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10055
Sequence Type Exemplar sequence
Representative Public ID T04A11.4 NCBI
Target Description T04A11.4 /REP_DB=WormBase Gene ID /WP=CE13122 /TR=O18648 /GB=CAB05604.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069987(11), NM_069984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069987 NCBI Caenorhabditis elegans T04A11.4 (T04A11.4) mRNA, complete cds. 11/11 None
NM_069984 NCBI Caenorhabditis elegans T04A11.1 (T04A11.1) mRNA, complete cds. 11/11 None
SNAP00000015157 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12475281:12477013:-1 11/11 None
SNAP00000015160 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12482818:12484550:-1 11/11 None
GENEFINDER00000015169 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12475281:12477013:-1 11/11 None
GENEFINDER00000015172 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12482863:12484550:-1 10/11 None
T04A11.1 ENSEMBL cdna:known chromosome:CEL140:IV:12475281:12477013:-1 gene:T04A11.1 11/11 None
T04A11.4 ENSEMBL cdna:known chromosome:CEL140:IV:12482818:12484550:-1 gene:T04A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12475286-12477019(-) 100.0 100.0
chrIV:12482823-12484556(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl T04A11.1
T04A11.4
Entrez Gene 188042 Entrez gene
188044 Entrez gene
SwissProt O18648 EMBL-EBI
WormBase CE13122 Wormbase
CE13122 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14413_AT phenazine biosynthesis PhzC/PhzF family protein at
ATH1-121501:255451_AT phenazine biosynthesis PhzC/PhzF family protein at
CANINE:1594605_AT similar to MAWD binding protein (Unknown protein 32 from 2D-page of liver tissue) cfa
CANINE_2:CFA.14171.1.S1_AT similar to MAWD binding protein (Unknown protein 32 from 2D-page of liver tissue) cfa
CANINE_2:CFAAFFX.21001.1.S1_S_AT similar to MAWD binding protein (Unknown protein 32 from 2D-page of liver tissue) cfa
CHICKEN:GGA.10286.1.S1_AT similar to MAWD binding protein (Unknown protein 32 from 2D-page of liver tissue) gga
HG-U133_PLUS_2:219543_AT MAWD binding protein hs
HG-U133A:219543_AT MAWD binding protein hs
HG-FOCUS:219543_AT MAWD binding protein hs
HG-U133A_2:219543_AT MAWD binding protein hs
HU35KSUBB:RC_T87174_AT MAWD binding protein hs
HU35KSUBB:RC_R54416_AT MAWD binding protein hs
U133_X3P:G11545856_3P_AT MAWD binding protein hs
U133_X3P:HS2.16341.2.S1_3P_S_AT MAWD binding protein hs
HG-U133_PLUS_2:1555175_A_AT MAWD binding protein hs
HG-U95B:58322_AT MAWD binding protein hs
HG-U95C:61943_AT MAWD binding protein hs
HG-U95D:88676_AT MAWD binding protein hs
MOUSE430_2:1425057_AT RIKEN cDNA 0610038K03 gene mm
MOE430A:1425057_AT RIKEN cDNA 0610038K03 gene mm
MOUSE430A_2:1425057_AT RIKEN cDNA 0610038K03 gene mm
MG-U74CV2:140440_AT RIKEN cDNA 0610038K03 gene (0610038K03Rik), mRNA mm
MOUSE430_2:1447121_AT RIKEN cDNA 0610038K03 gene (0610038K03Rik), mRNA mm
MOE430B:1447121_AT RIKEN cDNA 0610038K03 gene (0610038K03Rik), mRNA mm
MU19KSUBA:TC22908_AT RIKEN cDNA 0610038K03 gene (0610038K03Rik), mRNA mm
RG-U34C:RC_AI233773_AT MAWD binding protein rn
RAE230A:1370320_AT MAWD binding protein rn
RAT230_2:1370320_AT MAWD binding protein rn
RAE230B:1390993_AT MAWD binding protein rn
RAT230_2:1390993_AT MAWD binding protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05605 Hypothetical protein T04A11.1 [Caenorhabditis elegans] emb|CAB05604.1| Hypothetical protein T04A11.4 [Caenorhabditis elegans] ref|NP_502388.1| T04A11.4 [Caenorhabditis elegans] ref|NP_502385.1| T04A11.1 [Caenorhabditis elegans] 0.0
blast CAB05605 Hypothetical protein T04A11.1 [Caenorhabditis elegans] emb|CAB05604.1| Hypothetical protein T04A11.4 [Caenorhabditis elegans] ref|NP_502388.1| T04A11.4 [Caenorhabditis elegans] ref|NP_502385.1| T04A11.1 [Caenorhabditis elegans] 1.0E-180
blast CAE59867 Hypothetical protein CBG03343 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR003719 EMBL-EBI Phenazine biosynthesis PhzC/PhzF protein 1.0E-126
Pfam IPR003719 EMBL-EBI Phenazine biosynthesis PhzC/PhzF protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182091_S_AT
gacgtctatcaagtttcatcacacagtgaacccacttcatgggattttctctgaattcaa
ggcgccgcatttcctatttgatattgtaaagtgtgtggttccaactgagatggcaatcga
agcttgcgtgtacgcagcgaaacctcgagtcttggtagtcgtagtagatcctcttacaac
aaaatttgaattggaagcagttaaaatcgatgttacacgaatgcttcaaattcacgataa
cggttttctacaaggaattgcattgacgttgagaccgaagaatgcattaattcaaggatt
caccgattcttctgatgaaccatttgactatgcttgtcgttactttgctccttgggttgg
aataaatgaggatccagcaacagggcatgcacaatgtgcaatgggtcccttttggtcaaa
gataacgggaaaaaagtcgctatatgcatttcaagcatatccaactcgaggaggtctgtt
ccgtttaagcttccacgatggacgagttatattaaatggaccatctgtcactgtacttag
ag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTCTATCAAGTTTCATCACACA 483 377 402 Antisense
TTTTCTCTGAATTCAAGGCGCCGCA 316 677 446 Antisense
GCGCCGCATTTCCTATTTGATATTG 675 287 463 Antisense
ACGCAGCGAAACCTCGAGTCTTGGT 484 91 533 Antisense
GGTAGTCGTAGTAGATCCTCTTACA 508 505 555 Antisense
ACTATGCTTGTCGTTACTTTGCTCC 614 101 728 Antisense
GAGGATCCAGCAACAGGGCATGCAC 616 403 769 Antisense
GCACAATGTGCAATGGGTCCCTTTT 508 317 790 Antisense
TCCAACTCGAGGAGGTCTGTTCCGT 258 587 861 Antisense
TCTGTTCCGTTTAAGCTTCCACGAT 195 607 876 Antisense
GGACCATCTGTCACTGTACTTAGAG 522 523 919 Antisense
Sequence Source Affymetrix Proprietary Database