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[182090_at]

Description Y80D3A.8 /REP_DB=WormBase Gene ID /WP=CE24677 /TR=Q9U1Q9 /GB=CAB60442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 0.9
(-3)
A 		7
(-0.9)
A 		18.4
(3)
A 		9.1
(-0.2)
A 		18
B 1.9
(-2)
A 		1.9
(-2)
A 		0.9
(-3)
A 		6.9
(3)
A 		6
C 0.9
(-3)
A 		1.8
(-2.7)
A 		1.3
(-2.9)
A 		20.3
(3)
A 		19
avr 1.2
(-3) 		3.6
(-1.7) 		6.9
(0.1) 		12.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.4
(-0.1)
A 		3.2
(2)
A 		1.9
(-1.4)
A 		1.3
(-3)
A 		1.4
(-2.7)
A 		3.6
(3)
A 		2
B 3.5
(-2.2)
A 		19
(2.3)
A 		21.6
(3)
A 		4.1
(-2)
A 		0.8
(-3)
A 		2
(-2.7)
A 		21
C 1.6
(-2.6)
A 		2.9
(0.1)
A 		1.7
(-2.4)
A 		2.3
(-1.1)
A 		1.4
(-3)
A 		4.3
(3)
A 		3
avr 2.5
(-1.9) 		8.4
(3) 		8.4
(3) 		2.6
(-1.8) 		1.2
(-3) 		3.3
(-1.3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-3)
A 		1.5
(-1.4)
A 		4.8
(3)
A 		1.3
(-1.7)
A 		5
B 0.6
(-1.2)
A 		0.5
(-1.6)
A 		0.2
(-3)
A 		1.5
(3)
A 		1
C 0.3
(-3)
A 		0.5
(-2.6)
A 		0.5
(-2.6)
A 		3.4
(3)
A 		3
avr 0.4
(-3) 		0.8
(-1.6) 		1.8
(1.9) 		2.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(-2.3)
A 		1.1
(3)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		0.4
(-2.3)
A 		0.9
(1.5)
A 		1
B 1.2
(-2.1)
A 		6.3
(3)
A 		5.3
(2)
A 		1.1
(-2.2)
A 		0.3
(-3)
A 		0.7
(-2.6)
A 		6
C 0.6
(-1.9)
A 		0.9
(-0.3)
A 		0.4
(-3)
A 		0.5
(-2.5)
A 		0.5
(-2.5)
A 		1.5
(3)
A 		1
avr 0.7
(-2.3) 		2.8
(3) 		2
(1) 		0.6
(-2.5) 		0.4
(-3) 		1
(-1.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182090_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14483
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.8 NCBI
Target Description Y80D3A.8 /REP_DB=WormBase Gene ID /WP=CE24677 /TR=Q9U1Q9 /GB=CAB60442.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075290 NCBI Caenorhabditis elegans Y80D3A.8 (Y80D3A.8) mRNA, complete cds. 11/11 None
SNAP00000017351 ENSEMBL cdna:SNAP chromosome:CEL140:V:18946316:18949478:1 11/11 None
GENEFINDER00000017384 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18934498:18949478:1 11/11 None
Y80D3A.8 ENSEMBL cdna:known chromosome:CEL140:V:18943041:18949478:1 gene:Y80D3A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18943040-18949478(+) 94.56 100.0
Public Domain and Genome References
Gene Title
Ensembl Y80D3A.8
Entrez Gene 180237 Entrez gene
SwissProt Q9U1Q9 EMBL-EBI
WormBase CE24677 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
blast T45031 hypothetical protein Y39B6B.e [imported] - Caenorhabditis elegans 0.0
blast CAD31825 Hypothetical protein Y39B6A.30 [Caenorhabditis elegans] ref|NP_741667.1| Y39B6A.30 [Caenorhabditis elegans] 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 8.1E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.2E-75
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.2E-75
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 8.1E-26
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.2E-75
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507691.1 1 867-889
Y80D3A.8 1 867-889
SNAP00000017351 1 7-29
GENEFINDER00000017384 1 230-252
Sequence
Target Sequence 
>C. ELEGANS:182090_AT
tgatgctgacgcaatacgacgttgaacatattgtaatgcttggtcaaaacatggagaatt
tgattgtcaagtgtgactactacattccaccacacatttctgagccgttcaaaatcggac
ggttcaatatcaagattacagatgggaaaagtattttgaataagaaaatatatcaaagaa
cactggaagttgtcgattcgactggaaaacttgcgacgagaactgtgatgcattatcaat
atgcaggatggactgcacgtggagttccaaagagtcatgctgaaatgtttgacctgatgg
agatgttgaagaaaagcgagaagccaatcgtggtgcaatgcccgaacggaatcggaagat
ccatggccttcattggaaccgagtgtcttgcccgtcaagttgaagccgatccgacaatcg
aactgactgaagctctgaaacacatgcgcgagcatcgttggaacggaattcagaagaatt
ttcagctgtactggatgacactgggaaccatgtaccgtcttatcaaggaatatggatttg
acatgaagatttacgatcaacaaatggcaatattttctgatgtagtcgatcggttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGCTGACGCAATACGACGTTGA 163 567 3266 Antisense
AAGTGTGACTACTACATTCCACCAC 476 157 3334 Antisense
GAGCCGTTCAAAATCGGACGGTTCA 119 385 3367 Antisense
GATTCGACTGGAAAACTTGCGACGA 50 433 3460 Antisense
GCGACGAGAACTGTGATGCATTATC 129 289 3478 Antisense
CAGGATGGACTGCACGTGGAGTTCC 537 207 3509 Antisense
ATGCTGAAATGTTTGACCTGATGGA 132 43 3542 Antisense
GCCAATCGTGGTGCAATGCCCGAAC 12 279 3588 Antisense
GGTGCAATGCCCGAACGGAATCGGA 176 499 3597 Antisense
CGAGCATCGTTGGAACGGAATTCAG 88 251 3714 Antisense
TTTCTGATGTAGTCGATCGGTTGGT 356 671 3839 Antisense
Sequence Source Affymetrix Proprietary Database