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[182088_s_at]

Description F57F4.4 /REP_DB=WormBase Gene ID /WP=CE11344 /TR=Q94247 /GB=AAB09167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 06      6grp_total > 15      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8802
1 2 3 4 range
A 14902.1
(3)
P 		13040.5
(1.7)
P 		13147.5
(1.7)
P 		6567.3
(-3)
P 		8335
B 15070.8
(3)
P 		13411.3
(1.6)
P 		14173.9
(2.3)
P 		7884.7
(-3)
P 		7186
C 14905.3
(3)
P 		13147.5
(1.8)
P 		12896.3
(1.6)
P 		6268.4
(-3)
P 		8637
avr 14959.4
(3) 		13199.8
(1.7) 		13405.9
(1.8) 		6906.8
(-3) 		8053

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9650
1 2 3 4 5 6 range
A 13201.1
(3)
P 		13134.6
(2.9)
P 		7055.8
(-2)
P 		5874.4
(-3)
P 		6279.5
(-2.7)
P 		7069
(-2)
P 		7327
B 12164.3
(3)
P 		11174
(2.2)
P 		10391.1
(1.6)
P 		7458.1
(-0.7)
P 		4618.4
(-3)
P 		5121.4
(-2.6)
P 		7546
C 14268.4
(3)
P 		11064.8
(0.9)
P 		9072.4
(-0.4)
P 		7041.2
(-1.7)
P 		6605.1
(-2)
P 		5048.5
(-3)
P 		9220
avr 13211.3
(3) 		11791.1
(1.9) 		8839.8
(-0.5) 		6791.2
(-2.2) 		5834.3
(-2.9) 		5746.3
(-3) 		7465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4465
1 2 3 4 range
A 5425.9
(3)
P 		2830.7
(-0.5)
P 		3437
(0.3)
P 		961.3
(-3)
P 		4465
B 4806
(3)
P 		3312.3
(0.1)
P 		3284.4
(0.1)
P 		1680.2
(-3)
P 		3126
C 4934.1
(3)
P 		3780
(1.2)
P 		4494.8
(2.3)
P 		1057
(-3)
P 		3877
avr 5055.3
(3) 		3307.7
(0.3) 		3738.7
(0.9) 		1232.8
(-3) 		3823

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3873
1 2 3 4 5 6 range
A 2433.5
(-1.2)
P 		4671.3
(3)
P 		1536.6
(-2.9)
P 		1489.9
(-3)
P 		1894.9
(-2.2)
P 		1721.1
(-2.6)
P 		3181
B 4232.6
(3)
P 		3719.4
(1.7)
P 		2523.3
(-1.4)
P 		1975.4
(-2.7)
P 		1876.4
(-3)
P 		1909.7
(-2.9)
P 		2356
C 5288.7
(3)
P 		3376.2
(0)
P 		2309.1
(-1.6)
P 		1416
(-3)
P 		2137.3
(-1.9)
P 		1690
(-2.6)
P 		3873
avr 3984.9
(3) 		3922.3
(2.8) 		2123
(-1.7) 		1627.1
(-3) 		1969.5
(-2.1) 		1773.6
(-2.6) 		2358
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182088_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11805
Sequence Type Exemplar sequence
Representative Public ID F57F4.4 NCBI
Target Description F57F4.4 /REP_DB=WormBase Gene ID /WP=CE11344 /TR=Q94247 /GB=AAB09167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072226 NCBI Caenorhabditis elegans F57F4.4 (F57F4.4) mRNA, complete cds. 11/11 None
SNAP00000021869 ENSEMBL cdna:SNAP chromosome:CEL140:V:6404125:6411377:-1 11/11 None
GENEFINDER00000021870 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6404125:6411377:-1 11/11 None
F57F4.4.2 ENSEMBL cdna:known chromosome:CEL140:V:6403767:6411378:-1 gene:F57F4.4 11/11 None
F57F4.4.1 ENSEMBL cdna:known chromosome:CEL140:V:6403768:6411378:-1 gene:F57F4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6404124-6411377(-) 100.0 100.0
chrV:6395291-6402515(-) 98.18 98.18
Public Domain and Genome References
Gene Title
Ensembl F57F4.4
Entrez Gene 3564957 Entrez gene
SwissProt Q94247 EMBL-EBI
WormBase CE11344 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB09167 Hypothetical protein F57F4.4 [Caenorhabditis elegans] ref|NP_504627.1| F57F4.4 [Caenorhabditis elegans] 0.0
blast AAB09166 Gei-4(four) interacting protein protein 1 [Caenorhabditis elegans] ref|NP_504626.1| GEI-4(Four) Interacting protein family member (gfi-1) [Caenorhabditis elegans] 0.0
blast CAE71872 Hypothetical protein CBG18927 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.3E-21
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 2.3E-25
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 2.7E-36
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 2.8E-29
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.6E-41
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.2E-37
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.8E-41
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 2.5E-37
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.3E-40
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.4E-36
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 3.3E-42
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 7.9E-41
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 8.1E-44
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.2E-38
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.3E-42
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.3E-36
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.7E-44
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 4.4E-38
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.2E-38
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 1.2E-33
Pfam IPR002603 EMBL-EBI Protein of unknown function ET 4.3E-37
Sequence
Target Sequence 
>C. ELEGANS:182088_S_AT
caatggaggaccagtcacagctgactcttacagtgcttgcgctggatcgtgcgcctcaat
ttcttacactgcaccatacaatggtggaaaccagacactcacactttacacctgtgatcc
agttactgtctgtacctccttgaacttgaccaactcgtgtgcttctattgacggcggact
ctccggatgctgttgtagcactaataactgcgttggtccaaacaatggcccaggaattgt
aaccacacaatcaccagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGGAGGACCAGTCACAGCTGAC 620 181 5943 Antisense
CACAGCTGACTCTTACAGTGCTTGC 336 195 5958 Antisense
ACAGTGCTTGCGCTGGATCGTGCGC 342 107 5972 Antisense
CTCAATTTCTTACACTGCACCATAC 306 227 5997 Antisense
ATGGTGGAAACCAGACACTCACACT 244 51 6023 Antisense
CAGACACTCACACTTTACACCTGTG 529 205 6034 Antisense
ACTTTACACCTGTGATCCAGTTACT 323 99 6045 Antisense
TCGTGTGCTTCTATTGACGGCGGAC 572 605 6097 Antisense
TCTATTGACGGCGGACTCTCCGGAT 498 613 6106 Antisense
AATGGCCCAGGAATTGTAACCACAC 699 159 6166 Antisense
ATTGTAACCACACAATCACCAGCCA 544 3 6178 Antisense
Sequence Source Affymetrix Proprietary Database