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[182087_at]

Description C17F3.1 /REP_DB=WormBase Gene ID /WP=CE08272 /TR=O44946 /GB=AAB97529.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 5.5
(-2.7)
A 		3.4
(-3)
A 		42.5
(3)
A 		30
(1.1)
A 		39
B 4.2
(-3)
A 		17.2
(0.1)
A 		7.5
(-2.2)
A 		29.3
(3)
A 		25
C 36
(0.2)
A 		14.6
(-2.7)
A 		12
(-3)
A 		57.3
(3)
M 		45
avr 15.2
(-2.2) 		11.7
(-3) 		20.7
(-1) 		38.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22.4
(0.5)
A 		3.2
(-2.7)
A 		28.1
(1.4)
A 		1.7
(-3)
A 		5.8
(-2.3)
A 		37.3
(3)
P 		36
B 23.1
(1.9)
A 		18.3
(-0.8)
A 		14.5
(-3)
A 		25
(3)
A 		23.6
(2.2)
P 		20.4
(0.4)
A 		11
C 19
(-1.1)
A 		32.6
(1.8)
A 		32.6
(1.8)
A 		33.2
(1.9)
A 		38.3
(3)
A 		9.8
(-3)
A 		29
avr 21.5
(-0) 		18
(-3) 		25.1
(3) 		20
(-1.3) 		22.6
(0.9) 		22.5
(0.8) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2
(-2.3)
A 		0.7
(-3)
A 		11.1
(3)
A 		4.4
(-0.9)
A 		10
B 1.3
(-3)
A 		4.3
(0.7)
A 		1.7
(-2.5)
A 		6.2
(3)
A 		5
C 11.9
(3)
A 		4.2
(-3)
A 		4.2
(-3)
A 		9.7
(1.3)
M 		8
avr 5.1
(0.2) 		3.1
(-3) 		5.7
(1.2) 		6.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(-0.4)
A 		1.1
(-2.5)
A 		6.1
(0.9)
A 		0.4
(-3)
A 		1.8
(-2)
A 		9.1
(3)
P 		9
B 8
(1.4)
A 		6.1
(-0.4)
A 		3.5
(-3)
A 		6.6
(0)
A 		9.6
(3)
P 		7.6
(1)
A 		6
C 7
(-0.6)
A 		10
(1.4)
A 		8.3
(0.3)
A 		6.7
(-0.8)
A 		12.4
(3)
A 		3.3
(-3)
A 		9
avr 6.4
(0.3) 		5.7
(-1) 		6
(-0.5) 		4.6
(-3) 		7.9
(3) 		6.7
(0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1996
Sequence Type Exemplar sequence
Representative Public ID C17F3.1 NCBI
Target Description C17F3.1 /REP_DB=WormBase Gene ID /WP=CE08272 /TR=O44946 /GB=AAB97529.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059515
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059515 NCBI Caenorhabditis elegans C17F3.1 (C17F3.1) mRNA, complete cds. None
C17F3.1 ENSEMBL cdna:known chromosome:CEL140:I:6677318:6677676:1 gene:C17F3.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6677246-6677567(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17F3.1
Entrez Gene 172386 Entrez gene
SwissProt O44946 EMBL-EBI
WormBase CE36270 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97529 Hypothetical protein C17F3.1 [Caenorhabditis elegans] ref|NP_491916.2| C17F3.1 [Caenorhabditis elegans] 5.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491916.2 2 2-20,40-62
C17F3.1 2 2-20,40-62
Sequence
Target Sequence 
>C. ELEGANS:182087_AT
tcgtcagaaaattcagttcccgttaaacccgaaaagcttcgtcaagcaaagatgataatt
gcttctttcgtgagttttttttctgctgtaattttcaatcaatggacacaagaatccgtt
caggttctcgccatcaccgccttgcccgcgattgccattttctgcggaggaaagaaagga
gccggtgaatctaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCAGAAAATTCAGTTCCCGTTA 460 603 85 Antisense
TAAACCCGAAAAGCTTCGTCAAGCA 374 273 108 Antisense
AGCTTCGTCAAGCAAAGATGATAAT 185 79 119 Antisense
GATAATTGCTTCTTTCGTGAGTTTT 623 421 138 Antisense
TAATTGCTTCTTTCGTGAGTTTTTT 158 635 140 Antisense
TTCTGCTGTAATTTTCAATCAATGG 690 693 165 Antisense
ATCAATGGACACAAGAATCCGTTCA 292 27 182 Antisense
ACAAGAATCCGTTCAGGTTCTCGCC 213 113 192 Antisense
TGCCCGCGATTGCCATTTTCTGCGG 244 583 227 Antisense
GATTGCCATTTTCTGCGGAGGAAAG 446 433 234 Antisense
GAAAGGAGCCGGTGAATCTAAAGAA 351 357 258 Antisense
Sequence Source Affymetrix Proprietary Database