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[182086_s_at]

Description C23H3.8 /REP_DB=WormBase Gene ID /WP=CE08325 /TR=P91083 /GB=AAK31445.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_high_8_8 > 45      6grp_highest_nonorm > 61      6grp_total > 20      4grp_total > 50      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 233.8
(-1.9)
A 		572
(3)
P 		423.7
(0.9)
P 		155.1
(-3)
P 		417
B 232.6
(-2.1)
P 		640.6
(3)
P 		319
(-1)
P 		162.6
(-3)
P 		478
C 211.2
(-3)
P 		510.3
(1.1)
P 		652
(3)
P 		225.2
(-2.8)
P 		441
avr 225.9
(-2.3) 		574.3
(3) 		464.9
(1.3) 		181
(-3) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 488
1 2 3 4 5 6 range
A 354.7
(-1.1)
P 		573.7
(3)
P 		328.8
(-1.6)
P 		483.5
(1.3)
P 		437
(0.5)
P 		250.8
(-3)
P 		323
B 265.4
(-1.5)
P 		627.6
(3)
P 		139.4
(-3)
P 		564.3
(2.2)
P 		334.6
(-0.6)
P 		225.1
(-1.9)
P 		488
C 271.2
(-2.1)
P 		591.2
(3)
P 		500.5
(1.6)
P 		532.9
(2.1)
P 		300.3
(-1.6)
P 		211.3
(-3)
P 		380
avr 297.1
(-1.9) 		597.5
(3) 		322.9
(-1.5) 		526.9
(1.9) 		357.3
(-0.9) 		229.1
(-3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 85.1
(0.7)
A 		124.2
(3)
P 		110.8
(2.2)
P 		22.7
(-3)
P 		102
B 74.2
(-1.1)
P 		158.2
(3)
P 		73.9
(-1.1)
P 		34.7
(-3)
P 		124
C 69.9
(-2)
P 		146.7
(0.4)
P 		227.3
(3)
P 		38
(-3)
P 		189
avr 76.4
(-0.6) 		143
(3) 		137.3
(2.7) 		31.8
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 65.4
(-2.8)
P 		204
(3)
P 		71.6
(-2.6)
P 		122.6
(-0.4)
P 		131.9
(-0)
P 		61.1
(-3)
P 		143
B 92.3
(-1)
P 		208.9
(3)
P 		33.9
(-3)
P 		149.5
(1)
P 		135.9
(0.5)
P 		84
(-1.3)
P 		175
C 100.5
(-1.4)
P 		180.4
(3)
P 		127.4
(0.1)
P 		107.2
(-1)
P 		97.2
(-1.6)
P 		70.7
(-3)
P 		110
avr 86.1
(-2.3) 		197.8
(3) 		77.6
(-2.7) 		126.4
(-0.4) 		121.7
(-0.6) 		71.9
(-3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182086_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5662
Sequence Type Exemplar sequence
Representative Public ID C23H3.8 NCBI
Target Description C23H3.8 /REP_DB=WormBase Gene ID /WP=CE08325 /TR=P91083 /GB=AAK31445.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026809(11), NM_061254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026809 NCBI Caenorhabditis elegans C23H3.9d (C23H3.9) mRNA, complete cds. 11/11 None
NM_061254 NCBI Caenorhabditis elegans C23H3.9c (C23H3.9) mRNA, complete cds. 11/11 A 
C23H3.9d ENSEMBL cdna:known chromosome:CEL140:II:71682:77454:-1 gene:C23H3.9 11/11 A 
C23H3.9c ENSEMBL cdna:known chromosome:CEL140:II:71708:73427:-1 gene:C23H3.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061252 6/11 Cross Hyb Matching Probes A 
NM_061253 6/11 Cross Hyb Matching Probes A 
SNAP00000015921 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015929 6/11 Cross Hyb Matching Probes None
C23H3.9a 6/11 Cross Hyb Matching Probes A 
C23H3.9b 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173391 4 2 NM_001026809 181963_at (10), 182086_s_at (11)
NM_061252 181963_at (11)
NM_061253 181963_at (10)
NM_061254 182086_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:71738-73427(-) 100.0 100.0
Public Domain and Genome References
Ensembl C23H3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81206 Hypothetical protein C23H3.9d [Caenorhabditis elegans] ref|NP_001021980.1| C23H3.9d [Caenorhabditis elegans] 0.0
blast AAN63453 Hypothetical protein C23H3.9b [Caenorhabditis elegans] ref|NP_493654.2| C23H3.9b [Caenorhabditis elegans] 0.0
blast AAN63452 Hypothetical protein C23H3.9a [Caenorhabditis elegans] ref|NP_493653.3| C23H3.9a [Caenorhabditis elegans] 0.0
blast AAN63454 Hypothetical protein C23H3.9c [Caenorhabditis elegans] ref|NP_493655.2| C23H3.9c [Caenorhabditis elegans] 0.0
blast AAN63452 Hypothetical protein C23H3.9a [Caenorhabditis elegans] ref|NP_493653.3| C23H3.9a [Caenorhabditis elegans] 2.0E-95
blast T25561 hypothetical protein C23H3.8 - Caenorhabditis elegans 2.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 9.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493655.2 4 26-48,58-80,101-123,143-165
C23H3.9c 4 26-48,58-80,101-123,143-165
Sequence
Target Sequence 
>C. ELEGANS:182086_S_AT
ggacaaccattccgagtacttccaaactatagacaaaaagccggttgcacacgacttttg
gctcaacgtcatcttctaaatcaagcatttttgtctttcttccgtctccatggagatgtt
ctctctttcatcatttctctcccttttcatttttgtcttcaaaactttcctcttcgaaaa
acagtatgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAACCATTCCGAGTACTTCCAA 72 525 817 Antisense
TTCCGAGTACTTCCAAACTATAGAC 559 693 826 Antisense
GACAAAAAGCCGGTTGCACACGACT 464 365 848 Antisense
AAGCCGGTTGCACACGACTTTTGGC 51 145 854 Antisense
TGCACACGACTTTTGGCTCAACGTC 533 575 862 Antisense
TTTTGGCTCAACGTCATCTTCTAAA 113 679 872 Antisense
CTTTCTTCCGTCTCCATGGAGATGT 347 223 911 Antisense
GTCTCCATGGAGATGTTCTCTCTTT 285 471 920 Antisense
AGATGTTCTCTCTTTCATCATTTCT 464 67 930 Antisense
TGTCTTCAAAACTTTCCTCTTCGAA 678 557 970 Antisense
TTCCTCTTCGAAAAACAGTATGTAC 624 699 983 Antisense
Sequence Source Affymetrix Proprietary Database