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[182085_at]

Description C23H3.8 /REP_DB=WormBase Gene ID /WP=CE08325 /TR=P91083 /GB=AAK31445.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 71      6grp_total > 11      4grp_total > 57      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 132.1
(-2.6)
P 		531.3
(3)
P 		509.9
(2.7)
P 		104.2
(-3)
P 		427
B 165.2
(-1.5)
P 		485.2
(2.6)
P 		515.3
(3)
P 		50.5
(-3)
P 		465
C 147.8
(-2.1)
P 		477.3
(2.3)
P 		529.9
(3)
P 		81.5
(-3)
P 		448
avr 148.4
(-2) 		497.9
(2.7) 		518.4
(3) 		78.7
(-3) 		440

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 230.2
(-1)
P 		505.9
(3)
P 		242.2
(-0.8)
P 		433.6
(1.9)
P 		199.5
(-1.5)
P 		94.4
(-3)
P 		412
B 213.4
(-1.5)
P 		439.8
(3)
P 		318.7
(0.6)
P 		370.8
(1.6)
P 		361.4
(1.4)
P 		137.3
(-3)
P 		303
C 283.8
(-0.2)
P 		402
(2.4)
P 		381.4
(1.9)
P 		199.8
(-2)
P 		430.8
(3)
P 		154.7
(-3)
P 		276
avr 242.5
(-0.9) 		449.2
(3) 		314.1
(0.5) 		334.7
(0.9) 		330.6
(0.8) 		128.8
(-3) 		320
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 48.1
(-1.3)
P 		115.3
(2.1)
P 		133.3
(3)
P 		15.2
(-3)
P 		118
B 52.7
(-0.7)
P 		119.8
(3)
P 		119.4
(3)
P 		10.8
(-3)
P 		109
C 48.9
(-1.8)
P 		137.2
(1.3)
P 		184.7
(3)
P 		13.7
(-3)
P 		171
avr 49.9
(-1.3) 		124.1
(2) 		145.8
(3) 		13.2
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 42.4
(-2.3)
P 		179.9
(3)
P 		52.7
(-1.9)
P 		110
(0.3)
P 		60.2
(-1.6)
P 		23
(-3)
P 		157
B 74.2
(-1.6)
P 		146.4
(3)
P 		77.4
(-1.4)
P 		98.2
(-0.1)
P 		146.8
(3)
P 		51.2
(-3)
P 		96
C 105.2
(0.9)
P 		122.6
(2)
P 		97.1
(0.4)
P 		40.2
(-3)
P 		139.4
(3)
P 		51.8
(-2.3)
P 		99
avr 73.9
(-1.2) 		149.6
(3) 		75.7
(-1.1) 		82.8
(-0.7) 		115.5
(1.1) 		42
(-3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5662
Sequence Type Exemplar sequence
Representative Public ID C23H3.8 NCBI
Target Description C23H3.8 /REP_DB=WormBase Gene ID /WP=CE08325 /TR=P91083 /GB=AAK31445.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026809(10), NM_061254(10), NM_061252(10), NM_061253(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026809 NCBI Caenorhabditis elegans C23H3.9d (C23H3.9) mRNA, complete cds. 10/11 None
NM_061254 NCBI Caenorhabditis elegans C23H3.9c (C23H3.9) mRNA, complete cds. 10/11 None
NM_061252 NCBI Caenorhabditis elegans C23H3.9a (C23H3.9) mRNA, complete cds. 10/11 A 
NM_061253 NCBI Caenorhabditis elegans C23H3.9b (C23H3.9) mRNA, complete cds. 10/11 A 
SNAP00000015921 ENSEMBL cdna:SNAP chromosome:CEL140:II:72104:73427:-1 10/11 None
GENEFINDER00000015929 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:71939:72790:-1 10/11 None
C23H3.9d ENSEMBL cdna:known chromosome:CEL140:II:71682:77454:-1 gene:C23H3.9 10/11 A 
C23H3.9c ENSEMBL cdna:known chromosome:CEL140:II:71708:73427:-1 gene:C23H3.9 10/11 A 
C23H3.9a ENSEMBL cdna:known chromosome:CEL140:II:71939:77512:-1 gene:C23H3.9 10/11 A 
C23H3.9b ENSEMBL cdna:known chromosome:CEL140:II:71939:77460:-1 gene:C23H3.9 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:71738-73427(-) 100.0 100.0
Public Domain and Genome References
Ensembl C23H3.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81206 Hypothetical protein C23H3.9d [Caenorhabditis elegans] ref|NP_001021980.1| C23H3.9d [Caenorhabditis elegans] 0.0
blast AAN63453 Hypothetical protein C23H3.9b [Caenorhabditis elegans] ref|NP_493654.2| C23H3.9b [Caenorhabditis elegans] 0.0
blast AAN63452 Hypothetical protein C23H3.9a [Caenorhabditis elegans] ref|NP_493653.3| C23H3.9a [Caenorhabditis elegans] 0.0
blast AAN63454 Hypothetical protein C23H3.9c [Caenorhabditis elegans] ref|NP_493655.2| C23H3.9c [Caenorhabditis elegans] 0.0
blast CAE62815 Hypothetical protein CBG06992 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 9.2E-10
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.5E-8
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 9.2E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493655.2 4 26-48,58-80,101-123,143-165
C23H3.9c 4 26-48,58-80,101-123,143-165
SNAP00000015921 4 26-48,58-80,101-123,143-165
Sequence
Target Sequence 
>C. ELEGANS:182085_AT
tgacagtgttgtcatcactcacgcctcgccgggtcacatgggaaacatgaacttcttcgc
tcaaaaaccaattctttaccattcaatggaatacattggacgtcacgtcactccaaccga
attgaaggaaagaccatatcgaaagttgtctggaaatgttgaagtatggaagacacccgg
acacacacaacacgacttgtctgtcttggtgcacaacgttgctggatacggaaccatggc
aattgttggagatttaattccgagtgagcacttgctcagtgagaagagagatgtaatgat
agaagaaggtgtctgggacaatgctatcaagagacaaaatgccaatttaattgtctgcat
ggctgattggatagttcctggacacggacaaccattccgagtacttccaaactatagaca
aaaagccggttgcacacgacttttggctcaacgtcatcttctaaatcaagcatttttgtc
tttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAGTGTTGTCATCACTCACGCC 1 573 432 Antisense
CTCGCCGGGTCACATGGGAAACATG 84 233 456 Antisense
GAACTTCTTCGCTCAAAAACCAATT 534 349 480 Antisense
AAACCAATTCTTTACCATTCAATGG 697 123 496 Antisense
ATGGAATACATTGGACGTCACGTCA 212 53 517 Antisense
TCACGTCACTCCAACCGAATTGAAG 206 625 534 Antisense
GTATGGAAGACACCCGGACACACAC 194 455 595 Antisense
CAACACGACTTGTCTGTCTTGGTGC 271 187 619 Antisense
GTCTTGGTGCACAACGTTGCTGGAT 108 469 634 Antisense
AGTTCCTGGACACGGACAACCATTC 213 63 804 Antisense
AAATCAAGCATTTTTGTCTTTCTTC 445 117 894 Antisense
Sequence Source Affymetrix Proprietary Database