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[182084_at]

Description B0348.1 /REP_DB=WormBase Gene ID /WP=CE17326 /TR=O61959 /GB=AAC17810.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-3)
A 		8.5
(3)
A 		6
(0.4)
A 		4.5
(-1.2)
A 		6
B 3.4
(3)
A 		3.3
(2.3)
A 		3.3
(2.3)
A 		2.5
(-3)
A 		1
C 4
(3)
A 		3.5
(0)
A 		3
(-3)
A 		3.7
(1.2)
A 		1
avr 3.4
(-3) 		5.1
(3) 		4.1
(-0.5) 		3.6
(-2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.9
(3)
A 		3.2
(0.2)
A 		2.5
(-2.6)
A 		3
(-0.6)
A 		2.9
(-1)
A 		2.4
(-3)
A 		2
B 2.5
(-1.3)
A 		3.6
(2.3)
A 		3
(0.3)
A 		3.1
(0.7)
A 		3.8
(3)
A 		2
(-3)
A 		2
C 2.6
(-1)
A 		3.1
(-0.1)
A 		3
(-0.3)
A 		3.3
(0.3)
A 		4.8
(3)
A 		1.5
(-3)
A 		3
avr 3
(0.3) 		3.3
(1.3) 		2.8
(-0.3) 		3.1
(0.7) 		3.8
(3) 		2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(-1.5)
A 		1.9
(3)
A 		1.6
(1.5)
A 		0.7
(-3)
A 		1
B 1.1
(3)
A 		0.8
(0)
A 		0.8
(0)
A 		0.5
(-3)
A 		1
C 1.3
(3)
A 		1
(0.4)
A 		1
(0.4)
A 		0.6
(-3)
A 		1
avr 1.1
(2) 		1.2
(3) 		1.1
(2) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-1)
A 		1.1
(3)
A 		0.5
(-3)
A 		0.8
(0)
A 		0.9
(1)
A 		0.6
(-2)
A 		1
B 0.9
(-1.7)
A 		1.2
(0.3)
A 		0.7
(-3)
A 		0.8
(-2.3)
A 		1.6
(3)
A 		0.8
(-2.3)
A 		1
C 1
(0)
A 		0.9
(-0.6)
A 		0.8
(-1.2)
A 		0.7
(-1.8)
A 		1.5
(3)
A 		0.5
(-3)
A 		1
avr 0.9
(-0.4) 		1.1
(1.3) 		0.7
(-2.1) 		0.8
(-1.3) 		1.3
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15815
Sequence Type Exemplar sequence
Representative Public ID B0348.1 NCBI
Target Description B0348.1 /REP_DB=WormBase Gene ID /WP=CE17326 /TR=O61959 /GB=AAC17810.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070727 NCBI Caenorhabditis elegans B0348.1 (B0348.1) mRNA, complete cds. 11/11 None
GENEFINDER00000028744 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:48750:49447:1 11/11 None
B0348.1 ENSEMBL cdna:known chromosome:CEL140:V:48750:49447:1 gene:B0348.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028743 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:48749-49447(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0348.1
Entrez Gene 181935 Entrez gene
SwissProt O61959 EMBL-EBI
WormBase CE17326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17810 Hypothetical protein B0348.1 [Caenorhabditis elegans] ref|NP_503128.1| B0348.1 [Caenorhabditis elegans] 2.0E-45
blast AAC17809 Hypothetical protein B0348.2 [Caenorhabditis elegans] ref|NP_503127.2| B0348.2 [Caenorhabditis elegans] 1.0E-26
blast CAE62306 Hypothetical protein CBG06368 [Caenorhabditis briggsae] 3.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503128.1 1 39-61
B0348.1 1 39-61
GENEFINDER00000028744 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:182084_AT
atggccgttccaattacagtttacgggccaaagatgaccgagcactacgagccgtactcg
gagtactgtccaaaatgccagtgcaaccacacgacccgcatggaatcccgacgtggaaat
tgttggtggatcgcgttcttcatcggatttttcctcttcttcccgatctgctactggctt
tgctgccagtcttccaaggacactctgcactattgtccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCGTTCCAATTACAGTTTACG 629 49 13 Antisense
TACAGTTTACGGGCCAAAGATGACC 510 641 27 Antisense
AAAGATGACCGAGCACTACGAGCCG 476 121 42 Antisense
GCACTACGAGCCGTACTCGGAGTAC 184 315 54 Antisense
CTCGGAGTACTGTCCAAAATGCCAG 49 233 69 Antisense
CAAAATGCCAGTGCAACCACACGAC 220 189 83 Antisense
CCCGCATGGAATCCCGACGTGGAAA 561 259 107 Antisense
AATTGTTGGTGGATCGCGTTCTTCA 92 179 130 Antisense
TACTGGCTTTGCTGCCAGTCTTCCA 224 647 184 Antisense
AGTCTTCCAAGGACACTCTGCACTA 406 61 200 Antisense
AGGACACTCTGCACTATTGTCCGTC 216 55 209 Antisense
Sequence Source Affymetrix Proprietary Database