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[182083_at]

Description Y48C3A.4 /REP_DB=WormBase Gene ID /WP=CE22135 /TR=Q9NAG7 /GB=CAB55101.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 29      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 28      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 274.9
(1)
P 		222.5
(-2)
P 		204.5
(-3)
P 		310.5
(3)
P 		106
B 286.4
(3)
P 		221.6
(-0.9)
P 		187.9
(-3)
P 		240
(0.2)
P 		99
C 239.8
(0.9)
P 		247
(1.2)
P 		169.3
(-3)
P 		279.1
(3)
P 		110
avr 267
(2.4) 		230.4
(-0.1) 		187.2
(-3) 		276.5
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 232.8
(0.7)
P 		254
(1.6)
P 		164.3
(-2.6)
P 		155.2
(-3)
M 		243.1
(1.1)
P 		282.7
(3)
P 		128
B 355.4
(3)
P 		309.4
(1.4)
P 		194.5
(-2.8)
P 		187.6
(-3)
P 		209.6
(-2.2)
P 		208.9
(-2.2)
P 		168
C 314.6
(3)
P 		249.6
(0.7)
P 		142.6
(-3)
P 		199.6
(-1)
M 		213.4
(-0.5)
P 		204.2
(-0.9)
P 		172
avr 300.9
(3) 		271
(1.7) 		167.1
(-3) 		180.8
(-2.4) 		222
(-0.5) 		231.9
(-0.1) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 100.1
(3)
P 		48.3
(-2.7)
P 		53.5
(-2.1)
P 		45.5
(-3)
P 		55
B 91.3
(3)
P 		54.7
(-1.6)
P 		43.5
(-3)
P 		51.1
(-2)
P 		48
C 79.4
(3)
P 		71
(1.4)
P 		59
(-0.8)
P 		47.1
(-3)
P 		32
avr 90.3
(3) 		58
(-1.6) 		52
(-2.4) 		47.9
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 42.9
(-2.2)
P 		90.4
(3)
P 		35.8
(-3)
P 		39.4
(-2.6)
M 		73.4
(1.1)
P 		68.8
(0.6)
P 		55
B 123.6
(3)
P 		103
(1.4)
P 		47.2
(-3)
P 		49.7
(-2.8)
P 		85.2
(-0)
P 		77.9
(-0.6)
P 		76
C 116.6
(3)
P 		76.2
(-0)
P 		36.3
(-3)
P 		40.1
(-2.7)
M 		69.1
(-0.5)
P 		68.4
(-0.6)
P 		80
avr 94.4
(3) 		89.9
(2.5) 		39.8
(-3) 		43.1
(-2.6) 		75.9
(1) 		71.7
(0.5) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2714
Sequence Type Exemplar sequence
Representative Public ID Y48C3A.4 NCBI
Target Description Y48C3A.4 /REP_DB=WormBase Gene ID /WP=CE22135 /TR=Q9NAG7 /GB=CAB55101.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064410 NCBI Caenorhabditis elegans Y48C3A.4 (Y48C3A.4) mRNA, complete cds. 11/11 None
SNAP00000006610 ENSEMBL cdna:SNAP chromosome:CEL140:II:13280035:13281345:-1 10/11 None
GENEFINDER00000006669 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13280035:13285669:-1 11/11 None
Y48C3A.4 ENSEMBL cdna:known chromosome:CEL140:II:13279668:13285713:-1 gene:Y48C3A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13280031-13285675(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48C3A.4
Entrez Gene 174971 Entrez gene
SwissProt Q9NAG7 EMBL-EBI
WormBase CE22135 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55101 Hypothetical protein Y48C3A.4 [Caenorhabditis elegans] ref|NP_496811.1| Y48C3A.4 [Caenorhabditis elegans] 0.0
blast CAE73368 Hypothetical protein CBG20804 [Caenorhabditis briggsae] 1.0E-125
blast CAE73368 Hypothetical protein CBG20804 [Caenorhabditis briggsae] 1.0E-122
blast CAB55101 Hypothetical protein Y48C3A.4 [Caenorhabditis elegans] ref|NP_496811.1| Y48C3A.4 [Caenorhabditis elegans] 3.0E-91
blast CAE73368 Hypothetical protein CBG20804 [Caenorhabditis briggsae] 1.0E-75
Sequence
Target Sequence 
>C. ELEGANS:182083_AT
gaatgcgatggcagtccacgtggccgagcacgcggacgccggctgctatcagtgtcggct
gtgcggatggcaggcaatcgataagtacaaaatctacacgcacatgagagaagaacatcc
gagaaaagttgacatgttcgtcgataaaagggatatgccgaagatgtgcctggtgctggg
acagtgctttccgaagacatcatcgcggccgaaaaaggactcgaatctgaatgcggatac
ctatttgactgagattttgagggaatccgcgagggaaaaggtttgccagttgtgtaaggg
acatgtgagacgggacaagacggcgatgatccggcatgtgcagactaatcatactattaa
atgcaaaacctgcaaaaccatctccactaccctcgaagatcaactcctccaccaagagca
atcccatcagctcaaagagcccaaaatgtcggtgcattacgcgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGATGGCAGTCCACGTGGCC 303 331 831 Antisense
CTGCTATCAGTGTCGGCTGTGCGGA 362 237 873 Antisense
GGCTGTGCGGATGGCAGGCAATCGA 396 539 887 Antisense
TATGCCGAAGATGTGCCTGGTGCTG 526 657 984 Antisense
GTGCTGGGACAGTGCTTTCCGAAGA 559 477 1003 Antisense
GCTTTCCGAAGACATCATCGCGGCC 72 305 1016 Antisense
GAATGCGGATACCTATTTGACTGAG 347 331 1059 Antisense
GAGACGGGACAAGACGGCGATGATC 484 393 1137 Antisense
GCGATGATCCGGCATGTGCAGACTA 143 291 1153 Antisense
GCAATCCCATCAGCTCAAAGAGCCC 520 321 1248 Antisense
AAAATGTCGGTGCATTACGCGCCAA 233 133 1273 Antisense
Sequence Source Affymetrix Proprietary Database