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[182082_at]

Description C49A1.10 /REP_DB=WormBase Gene ID /WP=CE15726 /TR=O45310 /GB=CAB05703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 51      6grp_total > 13      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 722
1 2 3 4 range
A 1170.8
(3)
P 		871.9
(0.5)
P 		699.8
(-0.9)
P 		449.1
(-3)
P 		722
B 481.6
(-3)
P 		1106.8
(3)
P 		760
(-0.3)
P 		568.9
(-2.2)
P 		625
C 582.4
(-2.5)
P 		941.9
(3)
P 		874.5
(2)
P 		550
(-3)
P 		392
avr 744.9
(-0) 		973.5
(3) 		778.1
(0.4) 		522.7
(-3) 		451

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 473
1 2 3 4 5 6 range
A 482.1
(-0.6)
P 		640.9
(2.7)
P 		655.7
(3)
P 		535.7
(0.5)
P 		362.7
(-3)
P 		366.4
(-2.9)
P 		293
B 836
(3)
P 		818.7
(2.8)
P 		550.9
(-0.7)
P 		529.5
(-1)
P 		615.5
(0.1)
P 		379.8
(-3)
P 		456
C 773.3
(3)
P 		661.4
(0.6)
P 		673.9
(0.9)
P 		695.6
(1.3)
P 		502.7
(-2.9)
P 		495.8
(-3)
P 		278
avr 697.1
(2.8) 		707
(3) 		626.8
(1.4) 		586.9
(0.5) 		493.6
(-1.4) 		414
(-3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 426.3
(3)
P 		189.3
(-0.9)
P 		182.9
(-1)
P 		65.7
(-3)
P 		361
B 153.6
(-1.7)
P 		273.3
(3)
P 		176.1
(-0.8)
P 		121.2
(-3)
P 		152
C 192.8
(-0.2)
P 		270.8
(2)
P 		304.8
(3)
P 		92.7
(-3)
P 		212
avr 257.6
(3) 		244.5
(2.5) 		221.3
(1.7) 		93.2
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 88.9
(-3)
P 		227.9
(3)
P 		142.8
(-0.7)
P 		135.9
(-1)
P 		109.5
(-2.1)
P 		89.2
(-3)
P 		139
B 290.9
(3)
P 		272.5
(2.3)
P 		133.8
(-3)
P 		140.3
(-2.8)
P 		250.1
(1.4)
P 		141.6
(-2.7)
P 		157
C 286.6
(3)
P 		201.8
(-0.5)
P 		171.5
(-1.7)
P 		139.9
(-3)
P 		162.7
(-2.1)
P 		166
(-1.9)
P 		147
avr 222.1
(2.3) 		234.1
(3) 		149.4
(-2) 		138.7
(-2.6) 		174.1
(-0.5) 		132.3
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.677
Sequence Type Exemplar sequence
Representative Public ID C49A1.10 NCBI
Target Description C49A1.10 /REP_DB=WormBase Gene ID /WP=CE15726 /TR=O45310 /GB=CAB05703.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061085 NCBI Caenorhabditis elegans C49A1.10 (C49A1.10) mRNA, complete cds. 11/11 None
GENEFINDER00000008664 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14249711:14253432:-1 9/11 None
SNAP00000008661 ENSEMBL cdna:SNAP chromosome:CEL140:I:14250167:14252550:-1 11/11 None
C49A1.10 ENSEMBL cdna:known chromosome:CEL140:I:14250167:14252550:-1 gene:C49A1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14250097-14253366(-) 98.71 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A1.10
Entrez Gene 183591 Entrez gene
SwissProt O45310 EMBL-EBI
WormBase CE28542 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05703 Hypothetical protein C49A1.10 [Caenorhabditis elegans] ref|NP_493486.1| C49A1.10 [Caenorhabditis elegans] 3.0E-99
blast CAE71787 Hypothetical protein CBG18791 [Caenorhabditis briggsae] 9.0E-82
blast CAB05703 Hypothetical protein C49A1.10 [Caenorhabditis elegans] ref|NP_493486.1| C49A1.10 [Caenorhabditis elegans] 1.0E-73
blast CAE71787 Hypothetical protein CBG18791 [Caenorhabditis briggsae] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493486.1 4 20-42,57-79,96-118,138-160
C49A1.10 4 20-42,57-79,96-118,138-160
GENEFINDER00000008664 4 38-60,72-94,109-131,152-174
SNAP00000008661 4 20-42,57-79,96-118,138-160
Sequence
Target Sequence 
>C. ELEGANS:182082_AT
tcctctgcgccttggctgtatatggattgttccggaatttccacttatttggctcaaact
actttatttggttccttcttggcattatttcagtgtttattattttaatcgcaattgctc
ttttcgtctacgcaatcaaatcggaaaatgctcgctggctaattccacatttgtcggcgc
agatctttttggtgattttcctgattttggtcgcagttattgtagcgattctgatgcttt
ttggcgcttatcgtggaattcgaaatcttcttggagtgagcaactattatatgagtgatg
actcaaccttcctgctcggcatcatgattatcgttatctacctcctggtggcacttcttg
agattttcttcctttacattgtttatcgtctgtataaacatctctgccactacgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTGCGCCTTGGCTGTATATGG 296 591 377 Antisense
TGGTTCCTTCTTGGCATTATTTCAG 581 551 445 Antisense
AAATGCTCGCTGGCTAATTCCACAT 590 119 522 Antisense
TTGTCGGCGCAGATCTTTTTGGTGA 559 705 547 Antisense
GATTCTGATGCTTTTTGGCGCTTAT 227 433 603 Antisense
TGAGTGATGACTCAACCTTCCTGCT 701 567 668 Antisense
CCTTCCTGCTCGGCATCATGATTAT 629 269 683 Antisense
ATGATTATCGTTATCTACCTCCTGG 535 45 700 Antisense
CCTCCTGGTGGCACTTCTTGAGATT 185 267 717 Antisense
GAGATTTTCTTCCTTTACATTGTTT 674 395 736 Antisense
TAAACATCTCTGCCACTACGAATCA 122 641 771 Antisense
Sequence Source Affymetrix Proprietary Database