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[182080_at]

Description T22F7.3 /REP_DB=WormBase Gene ID /WP=CE01417 /TR=Q22685 /GB=AAA20672.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 477
1 2 3 4 range
A 66.9
(-3)
A 		408.1
(3)
P 		311.2
(1.3)
P 		92.8
(-2.5)
A 		341
B 73.3
(-2)
A 		287.7
(1.8)
P 		355.8
(3)
P 		16.4
(-3)
A 		339
C 67.8
(-2.4)
A 		493.2
(3)
P 		325.4
(0.9)
P 		24.3
(-3)
A 		469
avr 69.3
(-2.6) 		396.3
(3) 		330.8
(1.9) 		44.5
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 210.5
(1)
P 		272.7
(3)
P 		85.3
(-3)
A 		148.8
(-1)
P 		155.7
(-0.7)
P 		166.4
(-0.4)
A 		187
B 191.1
(3)
P 		181.8
(2.6)
P 		151.1
(1.3)
P 		149.6
(1.2)
P 		109.6
(-0.5)
P 		49.5
(-3)
A 		142
C 211.8
(3)
P 		179
(1.5)
P 		93.6
(-2.2)
P 		90.5
(-2.4)
A 		159.9
(0.7)
P 		76.1
(-3)
A 		136
avr 204.5
(2.6) 		211.2
(3) 		110
(-2.3) 		129.6
(-1.3) 		141.7
(-0.7) 		97.3
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 24.4
(-2.1)
A 		88.6
(3)
P 		81.4
(2.4)
P 		13.6
(-3)
A 		75
B 23.4
(-1.5)
A 		71.1
(2.1)
P 		82.5
(3)
P 		3.5
(-3)
A 		79
C 22.5
(-2.2)
A 		141.8
(3)
P 		113.4
(1.8)
P 		4.1
(-3)
A 		138
avr 23.4
(-2) 		100.5
(3) 		92.4
(2.5) 		7.1
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 38.8
(-1.5)
P 		97
(3)
P 		18.6
(-3)
A 		37.7
(-1.5)
P 		47
(-0.8)
P 		40.5
(-1.3)
A 		78
B 66.5
(3)
P 		60.5
(2.3)
P 		36.7
(-0.7)
P 		39.6
(-0.4)
P 		44.5
(0.3)
P 		18.4
(-3)
A 		48
C 78.5
(3)
P 		54.6
(0.6)
P 		23.8
(-2.4)
P 		18.2
(-3)
A 		51.7
(0.3)
P 		25.5
(-2.3)
A 		60
avr 61.3
(1.7) 		70.7
(3) 		26.4
(-3) 		31.8
(-2.3) 		47.7
(-0.1) 		28.1
(-2.8) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8291
Sequence Type Exemplar sequence
Representative Public ID T22F7.3 NCBI
Target Description T22F7.3 /REP_DB=WormBase Gene ID /WP=CE01417 /TR=Q22685 /GB=AAA20672.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171066 NCBI Caenorhabditis elegans T22F7.5 (T22F7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000006224 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:513873:524781:-1 11/11 None
SNAP00000006218 ENSEMBL cdna:SNAP chromosome:CEL140:III:514438:517337:-1 11/11 None
T22F7.5 ENSEMBL cdna:known chromosome:CEL140:III:513873:516612:-1 gene:T22F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:513872-523977(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22F7.5
Entrez Gene 259996 Entrez gene
SwissProt Q8WQC6 EMBL-EBI
WormBase CE30305 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL65794 Hypothetical protein T22F7.5 [Caenorhabditis elegans] ref|NP_741075.1| T22F7.5 [Caenorhabditis elegans] 0.0
blast H88380 protein T22F7.3 [imported] - Caenorhabditis elegans 0.0
blast AAL65793 Hypothetical protein T22F7.3 [Caenorhabditis elegans] ref|NP_497207.2| T22F7.3 [Caenorhabditis elegans] 0.0
blast CAE69237 Hypothetical protein CBG15280 [Caenorhabditis briggsae] 0.0
blast CAE69238 Hypothetical protein CBG15281 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 5.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.1E-15
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-10
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 9.0E-19
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 8.0E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.3E-28
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 6.5E-27
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 5.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.1E-15
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 5.7E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.1E-15
Sequence
Target Sequence 
>C. ELEGANS:182080_AT
gcccgaatggcactgtttgcactttgatgatgtgcaagtgtgcacatggaagctcacctt
acaaggataggtgtttgaacaatataaacatctgcgaagcaccaagacagcccgtgatat
cttccgactacaccctaatccagtgtgccaagcagaaatgtccgaagccttcagcatgtg
tctactcaaaaatgatacaatcctatgtgtgctgctccagtgccccagtgacgttgagca
agcctatcgcaccacccgtagttggaagaatcgtaaaaggtggtagaatcgtcggagcac
ctgctactactggagctgttatagtgaagccccatctggcaaagtacacctgtccagacg
gtcgagtgccgatgctcttcccacagaataatatgcctttggtctgtaatccagttaaag
gatgcccacagggtcacacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGAATGGCACTGTTTGCACTTT 411 285 3992 Antisense
CAAGACAGCCCGTGATATCTTCCGA 239 185 4094 Antisense
GACTACACCCTAATCCAGTGTGCCA 327 373 4117 Antisense
GAAGCCTTCAGCATGTGTCTACTCA 128 345 4155 Antisense
GATACAATCCTATGTGTGCTGCTCC 436 423 4185 Antisense
GTGCCCCAGTGACGTTGAGCAAGCC 596 477 4211 Antisense
CTATCGCACCACCCGTAGTTGGAAG 40 225 4235 Antisense
GCACCTGCTACTACTGGAGCTGTTA 272 313 4288 Antisense
GAAGCCCCATCTGGCAAAGTACACC 411 343 4317 Antisense
AAAGTACACCTGTCCAGACGGTCGA 520 121 4332 Antisense
AAGGATGCCCACAGGGTCACACTTG 175 161 4409 Antisense
Sequence Source Affymetrix Proprietary Database