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[182079_at]

Description Y87G2A.7 /REP_DB=WormBase Gene ID /WP=CE23136 /TR=Q9NA28 /GB=CAB54490.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 92      6grp_total > 88      4grp_total > 23      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 332.9
(3)
P 		147.8
(-3)
P 		225.6
(-0.5)
P 		320.9
(2.6)
P 		185
B 349
(3)
P 		255.3
(-0.6)
P 		192.6
(-3)
P 		280.4
(0.4)
P 		156
C 336.6
(3)
P 		178.9
(-3)
P 		215.1
(-1.6)
P 		309.8
(2)
P 		158
avr 339.5
(3) 		194
(-3) 		211.1
(-2.3) 		303.7
(1.5) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 258.2
(-3)
P 		281.5
(-2.5)
P 		273.6
(-2.7)
P 		258.2
(-3)
P 		409.6
(0.3)
P 		534.4
(3)
P 		276
B 313.4
(-2)
P 		304.2
(-2.2)
P 		272.9
(-2.9)
P 		267
(-3)
P 		500
(2.1)
P 		540.6
(3)
P 		274
C 251.6
(-2.9)
P 		280.5
(-2.2)
P 		245.5
(-3)
P 		346.6
(-0.6)
P 		322.3
(-1.2)
P 		503
(3)
P 		258
avr 274.4
(-2.8) 		288.7
(-2.4) 		264
(-3) 		290.6
(-2.4) 		410.6
(0.4) 		526
(3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 121.2
(3)
P 		32.1
(-3)
P 		59
(-1.2)
P 		47
(-2)
P 		89
B 111.3
(3)
P 		63.1
(-1.3)
P 		44.6
(-3)
P 		59.8
(-1.6)
P 		67
C 111.4
(3)
P 		51.4
(-3)
P 		75
(-0.6)
P 		52.2
(-2.9)
P 		60
avr 114.6
(3) 		48.9
(-3) 		59.5
(-2) 		53
(-2.6) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 47.6
(-3)
P 		100.1
(0.8)
P 		59.6
(-2.1)
P 		65.5
(-1.7)
P 		123.6
(2.5)
P 		130.1
(3)
P 		83
B 109.1
(-1.1)
P 		101.3
(-1.5)
P 		66.3
(-3)
P 		70.7
(-2.8)
P 		203.1
(3)
P 		201.6
(2.9)
P 		137
C 93.3
(-1.3)
P 		85.6
(-1.7)
P 		62.5
(-3)
P 		69.7
(-2.6)
P 		104.3
(-0.6)
P 		168.4
(3)
P 		106
avr 83.3
(-1.8) 		95.7
(-1.1) 		62.8
(-3) 		68.6
(-2.7) 		143.7
(1.7) 		166.7
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.419
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.7 NCBI
Target Description Y87G2A.7 /REP_DB=WormBase Gene ID /WP=CE23136 /TR=Q9NA28 /GB=CAB54490.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060978 NCBI Caenorhabditis elegans Y87G2A.7 (Y87G2A.7) mRNA, complete cds. 11/11 None
SNAP00000019589 ENSEMBL cdna:SNAP chromosome:CEL140:I:13572688:13583629:1 11/11 None
GENEFINDER00000019612 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13580498:13583629:1 11/11 None
Y87G2A.7 ENSEMBL cdna:known chromosome:CEL140:I:13580498:13583741:1 gene:Y87G2A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13580428-13583560(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.7
Entrez Gene 173226 Entrez gene
SwissProt Q9NA28 EMBL-EBI
WormBase CE23136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54490 Hypothetical protein Y87G2A.7 [Caenorhabditis elegans] ref|NP_493379.1| Y87G2A.7 [Caenorhabditis elegans] 0.0
blast CAB05283 Hypothetical protein T23G4.3 [Caenorhabditis elegans] ref|NP_502645.1| T23G4.3 [Caenorhabditis elegans] 1.0E-169
blast CAD92406 Hypothetical protein Y87G2A.15 [Caenorhabditis elegans] ref|NP_001021831.1| GRounDhog (hedgehog-like family) family member (grd-15) [Caenorhabditis elegans] 1.0E-108
blast CAE63552 Hypothetical protein CBG08038 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.8E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019589 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182079_AT
aaaaccactgtatatcttccgaaatactatcaggaatttctgtcagactgtggagtctcg
aaagttgatgatttggtggctttccagaaattaattgatctgggctttattaaattcctg
gagatcactaatccattcaattttaaatggttcaatgtagtagcagacttggctgatcgc
tgtggtgctgtatttgtgtcatcagaggattatcgccagagaaaaatgaaaataaattat
tcaaaaccgtcgggaaggatcattacgccgtgctttttgaatgcagaagaccggttattg
gttttagatccaacaattcggtatagaaagcctggagagaagacgtatacggttatttcg
tcggatcggatcctccaattcgatgagcccgacgacgaacgtatcaagctcagcgagcaa
ctgtacctcgaccaacaaatcaaactaatttgctctttgtgccagctctaccctgtaaaa
atgattaataaggtggccatcaagcagcttctggagctcgtcgtcttcgccggagccgat
ttcgagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCACTGTATATCTTCCGAAAT 644 131 865 Antisense
CAGACTTGGCTGATCGCTGTGGTGC 422 205 1028 Antisense
GCTGTGGTGCTGTATTTGTGTCATC 287 295 1043 Antisense
GAAGGATCATTACGCCGTGCTTTTT 200 335 1118 Antisense
GGTTATTTCGTCGGATCGGATCCTC 26 507 1215 Antisense
TCGGATCCTCCAATTCGATGAGCCC 327 607 1230 Antisense
GATGAGCCCGACGACGAACGTATCA 573 409 1246 Antisense
GCTCAGCGAGCAACTGTACCTCGAC 446 301 1272 Antisense
GTGCCAGCTCTACCCTGTAAAAATG 465 477 1323 Antisense
TCAAGCAGCTTCTGGAGCTCGTCGT 234 631 1364 Antisense
TCTTCGCCGGAGCCGATTTCGAGAT 681 617 1388 Antisense
Sequence Source Affymetrix Proprietary Database