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[182078_at]

Description T10E9.8 /REP_DB=WormBase Gene ID /WP=CE13557 /TR=O01604 /GB=AAB52475.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 71      6grp_total > 71      4grp_total > 41      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 67.4
(-3)
A 		252.4
(3)
P 		183.2
(0.8)
P 		116.8
(-1.4)
A 		185
B 63.3
(-3)
A 		127.1
(1.4)
P 		150
(3)
P 		80.8
(-1.8)
A 		87
C 44
(-3)
M 		187.5
(3)
P 		158.7
(1.8)
P 		156.6
(1.7)
P 		144
avr 58.2
(-3) 		189
(3) 		164
(1.9) 		118.1
(-0.3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 112.9
(-2.8)
A 		99.5
(-3)
P 		397.5
(2.3)
P 		439.8
(3)
P 		192.5
(-1.4)
P 		121.4
(-2.6)
P 		340
B 125.7
(-2.2)
P 		228.1
(-0.4)
P 		205.7
(-0.8)
P 		420.2
(3)
P 		275.8
(0.5)
P 		77.1
(-3)
P 		343
C 64.9
(-3)
P 		246.6
(-0.2)
P 		177
(-1.3)
P 		452.8
(3)
P 		252.8
(-0.1)
P 		86.5
(-2.7)
P 		388
avr 101.2
(-2.9) 		191.4
(-1.3) 		260.1
(-0.1) 		437.6
(3) 		240.4
(-0.5) 		95
(-3) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 24.5
(-1.8)
A 		54.8
(3)
P 		47.9
(1.9)
P 		17.1
(-3)
A 		38
B 20.2
(-2)
A 		31.4
(1.8)
P 		34.8
(3)
P 		17.2
(-3)
A 		18
C 14.6
(-3)
M 		53.9
(2.8)
P 		55.3
(3)
P 		26.4
(-1.3)
P 		41
avr 19.8
(-3) 		46.7
(3) 		46
(2.8) 		20.2
(-2.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 20.8
(-3)
A 		35.4
(-2)
P 		86.6
(1.4)
P 		111.5
(3)
P 		58.1
(-0.5)
P 		29.6
(-2.4)
P 		91
B 43.7
(-1.9)
P 		75.9
(0.4)
P 		49.9
(-1.5)
P 		111.3
(2.9)
P 		112
(3)
P 		28.7
(-3)
P 		83
C 24.1
(-3)
P 		75.3
(1.6)
P 		45.1
(-1.1)
P 		91.1
(3)
P 		81.8
(2.2)
P 		29
(-2.6)
P 		67
avr 29.5
(-3) 		62.2
(-0.4) 		60.5
(-0.5) 		104.6
(3) 		84
(1.4) 		29.1
(-3) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2152
Sequence Type Exemplar sequence
Representative Public ID T10E9.8 NCBI
Target Description T10E9.8 /REP_DB=WormBase Gene ID /WP=CE13557 /TR=O01604 /GB=AAB52475.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059482 NCBI Caenorhabditis elegans T10E9.8 (T10E9.8) mRNA, complete cds. 11/11 None
SNAP00000042993 ENSEMBL cdna:SNAP chromosome:CEL140:I:6547319:6549255:-1 11/11 None
GENEFINDER00000042997 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6547319:6549255:-1 11/11 None
T10E9.8 ENSEMBL cdna:known chromosome:CEL140:I:6547319:6549756:-1 gene:T10E9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6547247-6549685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.8
Entrez Gene 188385 Entrez gene
SwissProt O01604 EMBL-EBI
WormBase CE13557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52475 Hypothetical protein T10E9.8 [Caenorhabditis elegans] ref|NP_491883.1| T10E9.8 [Caenorhabditis elegans] 1.0E-110
blast AAB52475 Hypothetical protein T10E9.8 [Caenorhabditis elegans] ref|NP_491883.1| T10E9.8 [Caenorhabditis elegans] 8.0E-96
blast CAE67229 Hypothetical protein CBG12668 [Caenorhabditis briggsae] 7.0E-71
blast CAE67229 Hypothetical protein CBG12668 [Caenorhabditis briggsae] 1.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491883.1 4 53-75,88-110,120-142,163-185
T10E9.8 4 53-75,88-110,120-142,163-185
SNAP00000042993 4 47-66,81-103,115-137,161-183
GENEFINDER00000042997 4 47-66,81-103,115-137,161-183
Sequence
Target Sequence 
>C. ELEGANS:182078_AT
tcaacagtttcaaatcaccgtccagcagcctgttttgagctttttgatactccaaaagct
gctcttttaacagtatcaatgcaaattctaacaatgttattggaagttgcaatctatttt
attctcgaatcaaaaggattttttgtgagcagtggaatatttcgaatggttcttttacca
gttgcaactgtatacattggtggagcaattcttgctgcttttggaattttgatgaaacga
agattatttattacaattcatacgactattacaatgacattaatgtttttgactgatgct
cttgctatttcaattatttttttaatggcaattggaaaacgatctacttatctaaatcaa
ctaccgggccaatttgtaaatgaaaataaattctacagtgtccttggcccattttggatg
tatcttggtgcaatctgtcttcatataactgttgcaatcaatatggcatttttgcagcca
ctcaatgaatattcagcttcgtttgaaaatggatccgagaaggccaaagcgacaccgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACAGTTTCAAATCACCGTCCAG 131 631 109 Antisense
GTCCAGCAGCCTGTTTTGAGCTTTT 600 477 128 Antisense
GTTGCAATCTATTTTATTCTCGAAT 386 439 214 Antisense
GAATGGTTCTTTTACCAGTTGCAAC 268 329 272 Antisense
TGTTTTTGACTGATGCTCTTGCTAT 557 561 392 Antisense
TATCTAAATCAACTACCGGGCCAAT 166 651 457 Antisense
TAAATTCTACAGTGTCCTTGGCCCA 95 641 495 Antisense
GTCCTTGGCCCATTTTGGATGTATC 340 475 508 Antisense
ATCTTGGTGCAATCTGTCTTCATAT 274 31 530 Antisense
TGGCATTTTTGCAGCCACTCAATGA 67 547 572 Antisense
CGAGAAGGCCAAAGCGACACCGACG 222 251 624 Antisense
Sequence Source Affymetrix Proprietary Database