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[182077_at]

Description C50A2.3 /REP_DB=WormBase Gene ID /WP=CE17581 /TR=O44137 /GB=AAB88320.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 8.4
(-3)
A 		47.3
(-1.8)
A 		68
(-1.2)
A 		207.6
(3)
A 		199
B 67.3
(-2.9)
A 		79.2
(-2)
A 		65.9
(-3)
A 		142.9
(3)
A 		77
C 71.7
(-3)
A 		72.8
(-2.9)
A 		72.7
(-2.9)
A 		117.2
(3)
A 		46
avr 49.1
(-3) 		66.4
(-2) 		68.9
(-1.9) 		155.9
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 65.5
(-3)
A 		103.1
(-0.7)
A 		110.5
(-0.2)
A 		139.6
(1.6)
A 		162.9
(3)
A 		114.9
(0)
A 		97
B 41.5
(-3)
A 		96.4
(-0.2)
A 		105.3
(0.3)
A 		123.4
(1.2)
A 		157.5
(3)
P 		112.5
(0.7)
P 		116
C 50.6
(-3)
A 		89.6
(-0.6)
A 		146.5
(3)
A 		143.6
(2.8)
A 		145.7
(2.9)
P 		107.5
(0.6)
A 		96
avr 52.5
(-3) 		96.4
(-0.4) 		120.8
(1) 		135.5
(1.8) 		155.4
(3) 		111.6
(0.4) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 3
(-3)
A 		10.3
(-1.4)
A 		17.8
(0.2)
A 		30.4
(3)
A 		27
B 21.5
(-0.6)
A 		19.6
(-1.3)
A 		15.3
(-3)
A 		30.5
(3)
A 		15
C 23.7
(1.3)
A 		20.9
(-1.8)
A 		25.3
(3)
A 		19.8
(-3)
A 		6
avr 16.1
(-3) 		16.9
(-2.6) 		19.5
(-1.1) 		26.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 12.1
(-3)
A 		36.7
(1)
A 		24.1
(-1.1)
A 		35.4
(0.8)
A 		49.2
(3)
A 		28
(-0.4)
A 		37
B 14.4
(-3)
A 		32.1
(-0.9)
A 		25.6
(-1.6)
A 		32.7
(-0.8)
A 		64
(3)
P 		42
(0.3)
P 		50
C 18.8
(-3)
A 		27.3
(-1.2)
A 		37.3
(0.9)
A 		28.9
(-0.9)
A 		47.1
(3)
P 		36
(0.6)
A 		28
avr 15.1
(-3) 		32
(-0.4) 		29
(-0.8) 		32.3
(-0.3) 		53.4
(3) 		35.3
(0.2) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10479
Sequence Type Exemplar sequence
Representative Public ID C50A2.3 NCBI
Target Description C50A2.3 /REP_DB=WormBase Gene ID /WP=CE17581 /TR=O44137 /GB=AAB88320.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067644 NCBI Caenorhabditis elegans C50A2.3 (C50A2.3) mRNA, complete cds. 11/11 None
GENEFINDER00000019679 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1145904:1149891:-1 11/11 None
C50A2.3 ENSEMBL cdna:known chromosome:CEL140:IV:1145904:1149891:-1 gene:C50A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1145909-1149897(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50A2.3
Entrez Gene 183630 Entrez gene
SwissProt O44137 EMBL-EBI
WormBase CE17581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88320 Hypothetical protein C50A2.3 [Caenorhabditis elegans] ref|NP_500045.1| C50A2.3 [Caenorhabditis elegans] 9.0E-81
blast CAE68277 Hypothetical protein CBG13959 [Caenorhabditis briggsae] 2.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500045.1 1 28-50
C50A2.3 1 28-50
GENEFINDER00000019679 1 28-50
Sequence
Target Sequence 
>C. ELEGANS:182077_AT
atggacagccttattgtgccaaccacgccagagacacattttttccgttcgggaaacgca
acaacagaaatctgggaggtgatcctcgtcgcctcatgtcccataattttcatagtattc
ctctgtctgtgcgtcgtatgtctagttgtccgcagctatgagagacccgttcttccctct
gtgcaagctctgcgagcttctgcctcctccagctctcaaattgcgtcgattttgcgtcaa
ctaccacctccaccaaaatatgatatagcggtaacctcagtggatgcaccaccaccattc
tactccgacatcggcaaagaaatcgcgccgggattccgtacgacgccttccggagcccgt
ccaatgtccatgaaccgacagtttcagaatcaacatcacctgagcacgccgacagtacag
ccattgaatattcagtacttgtacccgccaagatatgaggccaccctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGACAGCCTTATTGTGCCAACCA 188 53 13 Antisense
GCCAGAGACACATTTTTTCCGTTCG 697 275 39 Antisense
AATCTGGGAGGTGATCCTCGTCGCC 529 169 81 Antisense
TCGCCTCATGTCCCATAATTTTCAT 200 599 101 Antisense
TTTCATAGTATTCCTCTGTCTGTGC 537 671 120 Antisense
CTGTGCGTCGTATGTCTAGTTGTCC 118 241 139 Antisense
GTTGTCCGCAGCTATGAGAGACCCG 529 437 157 Antisense
CTCCAGCTCTCAAATTGCGTCGATT 42 237 219 Antisense
TTGCGTCGATTTTGCGTCAACTACC 531 701 233 Antisense
GCGGTAACCTCAGTGGATGCACCAC 286 291 280 Antisense
GCCAAGATATGAGGCCACCCTACCA 695 277 459 Antisense
Sequence Source Affymetrix Proprietary Database