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[182075_at]

Description C34B2.1 /REP_DB=WormBase Gene ID /WP=CE16889 /TR=O44957 /GB=AAB97533.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 27      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 22.2
(-3)
A 		99.9
(1.9)
P 		23.2
(-2.9)
A 		116.5
(3)
P 		94
B 30.1
(-2.9)
A 		34.2
(-0.8)
A 		29.9
(-3)
A 		41.8
(3)
A 		12
C 29.3
(-2.7)
A 		60.3
(0.3)
A 		26.1
(-3)
A 		88
(3)
P 		62
avr 27.2
(-2.9) 		64.8
(1.1) 		26.4
(-3) 		82.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 44.6
(-0.3)
A 		58
(1.7)
A 		45.1
(-0.2)
P 		27.8
(-2.8)
A 		66.4
(3)
M 		26.2
(-3)
A 		40
B 31.4
(-0.2)
A 		37.1
(0.8)
A 		22.4
(-1.9)
A 		48.8
(3)
A 		16.4
(-3)
P 		16.7
(-2.9)
A 		32
C 34.8
(-2)
A 		82.1
(3)
P 		33.1
(-2.2)
A 		51.2
(-0.3)
A 		25.4
(-3)
A 		45.4
(-0.9)
A 		57
avr 36.9
(-1.5) 		59.1
(3) 		33.5
(-2.2) 		42.6
(-0.3) 		36.1
(-1.6) 		29.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.1
(-2.2)
A 		21.7
(3)
P 		6.1
(-3)
A 		17.1
(1.2)
P 		16
B 9.6
(3)
A 		8.5
(0.6)
A 		6.9
(-3)
A 		8.9
(1.4)
A 		3
C 9.7
(-2.6)
A 		17.3
(3)
A 		9.1
(-3)
A 		14.8
(1.2)
P 		8
avr 9.1
(-1.8) 		15.8
(3) 		7.4
(-3) 		13.6
(1.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.2
(-2.2)
A 		20.6
(3)
A 		9.8
(-1.6)
P 		7.1
(-2.7)
A 		20
(2.7)
M 		6.4
(-3)
A 		14
B 10.9
(1.4)
A 		12.3
(2.5)
A 		5.4
(-3)
A 		12.9
(3)
A 		6.7
(-2)
P 		6.2
(-2.4)
A 		8
C 12.9
(-1.3)
A 		25
(3)
P 		8.4
(-2.9)
A 		10.3
(-2.3)
A 		8.2
(-3)
A 		15.2
(-0.5)
A 		17
avr 10.7
(-1.5) 		19.3
(3) 		7.9
(-3) 		10.1
(-1.8) 		11.6
(-1.1) 		9.3
(-2.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.666
Sequence Type Exemplar sequence
Representative Public ID C34B2.1 NCBI
Target Description C34B2.1 /REP_DB=WormBase Gene ID /WP=CE16889 /TR=O44957 /GB=AAB97533.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060400
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060400 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-272) (tag-272) mRNA, complete cds. None
GENEFINDER00000007255 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10696453:10705023:1 None
SNAP00000007250 ENSEMBL cdna:SNAP chromosome:CEL140:I:10697961:10698891:1 None
C34B2.1 ENSEMBL cdna:known chromosome:CEL140:I:10696453:10698891:1 gene:C34B2.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10696383-10699173(+) 76.78 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-272
Ensembl C34B2.1
Entrez Gene 183191 Entrez gene
SwissProt O44957 EMBL-EBI
WormBase CE36631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02456 Hypothetical protein C34B2.11 [Caenorhabditis elegans] ref|NP_492802.1| C34B2.11 [Caenorhabditis elegans] 1.0E-52
blast AAB97533 Hypothetical protein C34B2.1 [Caenorhabditis elegans] ref|NP_492801.2| Temporarily Assigned Gene name family member (tag-272) [Caenorhabditis elegans] 2.0E-47
blast AAB97533 Hypothetical protein C34B2.1 [Caenorhabditis elegans] ref|NP_492801.2| Temporarily Assigned Gene name family member (tag-272) [Caenorhabditis elegans] 1.0E-46
blast CAE67346 Hypothetical protein CBG12809 [Caenorhabditis briggsae] 1.0E-33
blast CAE67345 Hypothetical protein CBG12808 [Caenorhabditis briggsae] 5.0E-25
blast AAB97533 Hypothetical protein C34B2.1 [Caenorhabditis elegans] ref|NP_492801.2| Temporarily Assigned Gene name family member (tag-272) [Caenorhabditis elegans] 4.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007255 2 203-225,252-269
Sequence
Target Sequence 
>C. ELEGANS:182075_AT
actggatcattcgatgggattcctaaaaatttcagagcaagtttgagaaaaactaacagc
gaagacggatcggacattttcgattacatggatgagggaattacgagaagttcttcacaa
ttctcgggaatcctaacaattgcaccttctgtcgccggaaaaacatctggagattttgga
catcttacagctgaattcactgctccaactcaaaatgaggagaaaccactgaagaagaag
cttgtgggaattctcaaaaatacgctcaatttgctgagctcggcaagtttgccgaattta
ccgtttgctgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGATCATTCGATGGGATTCCTA 49 97 25 Antisense
CAGCGAAGACGGATCGGACATTTTC 659 167 81 Antisense
GGACATTTTCGATTACATGGATGAG 528 525 96 Antisense
GAAGTTCTTCACAATTCTCGGGAAT 489 337 131 Antisense
GAATCCTAACAATTGCACCTTCTGT 342 329 152 Antisense
CACCTTCTGTCGCCGGAAAAACATC 412 201 167 Antisense
TTGGACATCTTACAGCTGAATTCAC 56 709 200 Antisense
CTGAATTCACTGCTCCAACTCAAAA 209 239 215 Antisense
GGGAATTCTCAAAAATACGCTCAAT 364 493 270 Antisense
AAATACGCTCAATTTGCTGAGCTCG 230 117 282 Antisense
TTGCCGAATTTACCGTTTGCTGAGC 298 699 313 Antisense
Sequence Source Affymetrix Proprietary Database