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[182074_at]

Description W02G9.1 /REP_DB=WormBase Gene ID /WP=CE18314 /TR=O61902 /GB=AAC17685.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 19      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 07      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 153.3
(-0.5)
P 		111.6
(-3)
P 		192.6
(1.9)
P 		211.6
(3)
P 		100
B 190
(3)
P 		171.3
(2.1)
P 		153.3
(1.2)
P 		67
(-3)
M 		123
C 153.4
(1.6)
P 		168.8
(2.3)
A 		182.9
(3)
P 		58.9
(-3)
A 		124
avr 165.6
(2) 		150.6
(0.6) 		176.3
(3) 		112.5
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 184.7
(3)
P 		96.5
(-3)
P 		151.9
(0.8)
P 		131.4
(-0.6)
P 		128.3
(-0.8)
P 		140.5
(-0)
P 		88
B 138.4
(0.5)
P 		123.7
(-3)
P 		136.8
(0.1)
P 		130.3
(-1.4)
P 		148.8
(3)
P 		131.6
(-1.1)
P 		25
C 174.1
(3)
P 		138.9
(0.2)
P 		170.1
(2.7)
P 		98.6
(-3)
P 		159.8
(1.9)
P 		154.4
(1.4)
P 		76
avr 165.7
(3) 		119.7
(-3) 		152.9
(1.3) 		120.1
(-2.9) 		145.6
(0.4) 		142.2
(-0.1) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.8
(3)
P 		24.2
(-3)
P 		50.4
(2)
P 		31
(-1.7)
P 		32
B 60.6
(3)
P 		42.3
(0.6)
P 		35.5
(-0.3)
P 		14.3
(-3)
M 		46
C 50.8
(1.6)
P 		48.5
(1.3)
A 		63.7
(3)
P 		9.9
(-3)
A 		54
avr 55.7
(3) 		38.3
(0.2) 		49.9
(2.1) 		18.4
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 34
(-2)
P 		34.3
(-1.7)
P 		33.1
(-3)
P 		33.3
(-2.8)
P 		38.7
(3)
P 		34.2
(-1.8)
P 		6
B 48.2
(0.3)
P 		41.2
(-1.2)
P 		33.2
(-3)
P 		34.5
(-2.7)
P 		60.5
(3)
P 		49.1
(0.5)
P 		27
C 64.5
(3)
P 		42.4
(0)
P 		43.3
(0.2)
P 		19.8
(-3)
P 		51.7
(1.3)
P 		51.7
(1.3)
P 		45
avr 48.9
(2.6) 		39.3
(-0.1) 		36.5
(-0.9) 		29.2
(-3) 		50.3
(3) 		45
(1.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15550
Sequence Type Exemplar sequence
Representative Public ID W02G9.1 NCBI
Target Description W02G9.1 /REP_DB=WormBase Gene ID /WP=CE18314 /TR=O61902 /GB=AAC17685.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071325 NCBI Caenorhabditis elegans NuDiX family member (ndx-2) (ndx-2) mRNA, complete cds. 11/11 None
GENEFINDER00000022911 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2662908:2664788:-1 11/11 None
W02G9.1 ENSEMBL cdna:known chromosome:CEL140:V:2662908:2664830:-1 gene:W02G9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022900 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2662907-2664788(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ndx-2
Ensembl W02G9.1
Entrez Gene 189126 Entrez gene
SwissProt O61902 EMBL-EBI
WormBase CE18314 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587510_AT similar to ADP-sugar pyrophosphatase (Nucleoside diphosphate-linked moiety X motif 5) (Nudix motif 5) (YSA1H) cfa
CANINE_2:CFA.10274.1.S1_S_AT similar to ADP-sugar pyrophosphatase (Nucleoside diphosphate-linked moiety X motif 5) (Nudix motif 5) (YSA1H) cfa
CHICKEN:GGA.9666.1.S1_A_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 gga
CHICKEN:GGA.9666.1.S1_A_AT similar to ADP-sugar pyrophosphatase (Nucleoside diphosphate-linked moiety X motif 5) (YSA1H) (HSPC115) gga
HG-U133_PLUS_2:223100_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
HG-U133B:223100_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
HU35KSUBA:RC_AA158132_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
U133_X3P:G12652566_3P_A_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
HG-U95B:56520_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
HG-U95E:78163_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 5 hs
MOUSE430_2:1430341_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MOE430B:1430341_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MG-U74BV2:108579_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MOE430A:1448651_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MOUSE430A_2:1448651_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MOUSE430_2:1448651_AT nudix (nucleoside diphosphate linked moiety X)-type motif 5 mm
MU19KSUBA:TC24958_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 5, mRNA (cDNA clone MGC:8023 IMAGE:3586340) mm
MU19KSUBA:TC24958_G_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 5, mRNA (cDNA clone MGC:8023 IMAGE:3586340) mm
MU19KSUBC:TC35147_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 5, mRNA (cDNA clone MGC:8023 IMAGE:3586340) mm
RG-U34C:RC_AA858886_AT nudix-type motif 5 rn
RAE230A:1373138_AT nudix-type motif 5 rn
RAT230_2:1373138_AT nudix-type motif 5 rn
RAE230A:1375584_AT Nudix-type motif 5 rn
RAT230_2:1375584_AT Nudix-type motif 5 rn
RAE230B:1394685_AT Nudix-type motif 5 rn
RAT230_2:1394685_AT Nudix-type motif 5 rn
Protein Similarities
Method ID Description E-Value
blast AAC17685 Nudix family protein 2 [Caenorhabditis elegans] ref|NP_503726.1| NuDiX family member (ndx-2) [Caenorhabditis elegans] sp|O61902|NDX2_CAEEL Putative nudix hydrolase 1.0E-123
blast CAE62530 Hypothetical protein CBG06639 [Caenorhabditis briggsae] 1.0E-100
blast CAB87374 SPBP35G2.12 [Schizosaccharomyces pombe] ref|NP_595387.1| hypothetical protein SPBP35G2.12 [Schizosaccharomyces pombe 972h-] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 2.5E-22
Sequence
Target Sequence 
>C. ELEGANS:182074_AT
gactcacactggacaggtcggggtgtggcaatcggtgcacagaaatacgaagcccgtgga
agcttcagccgacggtgtctctattattgctcgtgtccggaagcagggaaagctttatat
tgttttggtgaagcaatatcgtatcccgtgcggaaaactgtgcctcgagctccccgctgg
gctcatcgatgccggcgaaacggctcaacaggccgccattcgtgagctgaaggaggagac
gggatatgtcagtggaaaagtcgtgatggaatccaaactctgtttcctcgacccggggct
cactgacgactctcaatgccttgtcgtcgtcgacgtggacggtgatgctccggaaaacca
gaatccggtacaagtgctcgactcgaccgaatcgatcgaggtgctgctcgtcgagcaatc
cgcactgatggcctacgtcaccaatttggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCACACTGGACAGGTCGGGGTG 490 373 165 Antisense
CGGTGTCTCTATTATTGCTCGTGTC 94 245 237 Antisense
TATCCCGTGCGGAAAACTGTGCCTC 14 659 306 Antisense
GCTCAACAGGCCGCCATTCGTGAGC 99 287 367 Antisense
GGAATCCAAACTCTGTTTCCTCGAC 242 531 432 Antisense
ACGACTCTCAATGCCTTGTCGTCGT 411 93 470 Antisense
TCGACGTGGACGGTGATGCTCCGGA 536 599 494 Antisense
AGAATCCGGTACAAGTGCTCGACTC 472 75 524 Antisense
TGCTCGACTCGACCGAATCGATCGA 511 581 539 Antisense
TCGATCGAGGTGCTGCTCGTCGAGC 128 601 556 Antisense
GATGGCCTACGTCACCAATTTGGAT 192 405 591 Antisense
Sequence Source Affymetrix Proprietary Database