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[182073_s_at] --- /// zinc finger protein

Description H16D19.3 /REP_DB=WormBase Gene ID /WP=CE19928 /TR=Q9U3D5 /GB=CAA20942.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 24.5
(-3)
A 		45.5
(-1.9)
A 		65.9
(-0.9)
A 		143.1
(3)
A 		119
B 73.7
(1.2)
A 		64.6
(0.4)
A 		28.9
(-3)
A 		92.7
(3)
A 		64
C 15.4
(-3)
A 		61.3
(-1.5)
A 		76.4
(-1)
A 		197.8
(3)
P 		182
avr 37.9
(-3) 		57.1
(-1.9) 		57.1
(-1.9) 		144.5
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 45.8
(-0.3)
A 		2.8
(-3)
A 		61.5
(0.7)
A 		77.4
(1.7)
P 		97.1
(3)
P 		56.4
(0.4)
A 		94
B 35.2
(-2.3)
A 		30.7
(-2.6)
A 		24.2
(-3)
A 		52
(-1.3)
A 		119.9
(3)
P 		42.4
(-1.9)
A 		96
C 20.3
(-2.1)
A 		82.1
(1.4)
A 		4.9
(-3)
A 		65.6
(0.5)
A 		109
(3)
P 		41.4
(-0.9)
P 		104
avr 33.8
(-2.7) 		38.5
(-2.4) 		30.2
(-3) 		65
(-0.3) 		108.7
(3) 		46.7
(-1.7) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 8.9
(-3)
A 		9.9
(-2.5)
A 		17.2
(1.2)
A 		20.9
(3)
A 		12
B 23.5
(3)
A 		16
(0.3)
A 		6.7
(-3)
A 		19.8
(1.7)
A 		17
C 5.1
(-3)
A 		17.6
(-0.3)
A 		26.6
(1.6)
A 		33.3
(3)
P 		28
avr 12.5
(-3) 		14.5
(-2) 		16.8
(-0.9) 		24.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 8.4
(-1.4)
A 		1
(-3)
A 		13.4
(-0.4)
A 		19.6
(0.9)
P 		29.3
(3)
P 		13.7
(-0.3)
A 		28
B 12.2
(-2.1)
A 		10.2
(-2.4)
A 		5.9
(-3)
A 		13.8
(-1.9)
A 		48.7
(3)
P 		15.8
(-1.6)
A 		43
C 7.5
(-1.9)
A 		25
(1.2)
A 		1.3
(-3)
A 		13.2
(-0.9)
A 		35.3
(3)
P 		13.9
(-0.8)
P 		34
avr 9.4
(-2.5) 		12.1
(-2) 		6.9
(-3) 		15.5
(-1.3) 		37.8
(3) 		14.5
(-1.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182073_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.981
Sequence Type Exemplar sequence
Representative Public ID H16D19.3 NCBI
Target Description H16D19.3 /REP_DB=WormBase Gene ID /WP=CE19928 /TR=Q9U3D5 /GB=CAA20942.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060798(11), NM_060793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060798 NCBI Caenorhabditis elegans H16D19.3 (H16D19.3) mRNA, complete cds. 11/11 None
NM_060793 NCBI Caenorhabditis elegans T07D10.3 (T07D10.3) mRNA, complete cds. 11/11 A 
SNAP00000024092 ENSEMBL cdna:SNAP chromosome:CEL140:I:12634863:12637118:-1 10/11 None
GENEFINDER00000024103 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12634863:12637118:-1 11/11 None
SNAP00000037461 ENSEMBL cdna:SNAP chromosome:CEL140:I:12646851:12648583:1 9/11 None
GENEFINDER00000037465 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12646851:12649106:1 11/11 None
T07D10.3 ENSEMBL cdna:known chromosome:CEL140:I:12634863:12637118:-1 gene:T07D10.3 11/11 A 
H16D19.3 ENSEMBL cdna:known chromosome:CEL140:I:12646851:12648606:1 gene:H16D19.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12646781-12648537(+) 100.0 100.0
chrI:12635301-12637049(-) 98.23 98.23
Public Domain and Genome References
Gene Title
zinc finger protein
Ensembl T07D10.3
H16D19.3
Entrez Gene 186747 Entrez gene
188228 Entrez gene
SwissProt Q9U3D5 EMBL-EBI
O02303 EMBL-EBI
WormBase CE19928 Wormbase
CE34209 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04715 Hypothetical protein T07D10.3 [Caenorhabditis elegans] ref|NP_493194.2| T07D10.3 [Caenorhabditis elegans] 0.0
blast CAB04715 Hypothetical protein T07D10.3 [Caenorhabditis elegans] ref|NP_493194.2| T07D10.3 [Caenorhabditis elegans] 1.0E-162
blast CAA20942 Hypothetical protein H16D19.3 [Caenorhabditis elegans] ref|NP_493199.1| H16D19.3 [Caenorhabditis elegans] 1.0E-149
blast CAB04715 Hypothetical protein T07D10.3 [Caenorhabditis elegans] ref|NP_493194.2| T07D10.3 [Caenorhabditis elegans] 1.0E-120
blast CAA20942 Hypothetical protein H16D19.3 [Caenorhabditis elegans] ref|NP_493199.1| H16D19.3 [Caenorhabditis elegans] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:182073_S_AT
tcccgtctatggcaccaatttgtccatatggatgcatataacggatttctagatggaaaa
tttcagattcagctaccagattttgaatttgtgcgttcaaatgtaattccctgtccattt
tccacgtgtagcctactatttttggacctcattgatgcgagattccattacctcctggag
caccaatcctgccaactattttgctgtggagtacggttttcagactataagactgctttg
gagcatttacaaggaactggatctgttgaaacagaagcttgggatcagcagaaacatttt
ttgaagccagtttacatctgcaactgttgcaatcgtacttggtcgtcacgtagcgagtac
gtggcacatttacacggccgggatcatatgtgcccggatccggtgtgcaagtacattttt
gaaactaatgagaagtgtatccgacacttttttgagcagcattataaacacctattccta
gactccaggcacctacttctcaactacaaggatcatatgtgtgtaccacatgtcaacgcc
gatttcgggacaacaaggggtttcagagccacgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCGTCTATGGCACCAATTTGTCC 125 597 133 Antisense
GTAGCCTACTATTTTTGGACCTCAT 501 457 260 Antisense
TGATGCGAGATTCCATTACCTCCTG 708 565 285 Antisense
CACCAATCCTGCCAACTATTTTGCT 406 203 313 Antisense
GTTGCAATCGTACTTGGTCGTCACG 421 415 458 Antisense
GTGGCACATTTACACGGCCGGGATC 180 489 493 Antisense
ATGTGCCCGGATCCGGTGTGCAAGT 554 49 520 Antisense
GTATCCGACACTTTTTTGAGCAGCA 342 455 569 Antisense
TAAACACCTATTCCTAGACTCCAGG 371 639 597 Antisense
CCACATGTCAACGCCGATTTCGGGA 369 275 658 Antisense
AACAAGGGGTTTCAGAGCCACGTGG 437 119 684 Antisense
Sequence Source Affymetrix Proprietary Database